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    ankyrin [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831273, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ankyrin
    Primary source
    TAIR:AT5G14230
    Locus tag
    AT5G14230
    See related
    Araport:AT5G14230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18O22.20; F18O22_20
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (4591690..4595964)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Thioredoxin superfamily protein Neighboring gene Proteasome component (PCI) domain protein Neighboring gene Rubisco methyltransferase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001343327.1
    NM_121427.8

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ankyrin
    NP_196927.4
    • CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 66374 Blast hits to 25358 proteins in 1201 species: Archae - 121; Bacteria - 8133; Metazoa - 29530; Fungi - 5885; Plants - 3349; Viruses - 785; Other Eukaryotes - 18571 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4591690..4595964
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121427.8 → NP_196927.4  ankyrin [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196927.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UE58, A0A5S9Y4V2, F4K5I0
      Conserved Domains (3) summary
      COG0666
      Location:421 → 634
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:477 → 508
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:308 → 404
      Ank_2; Ankyrin repeats (3 copies)

    2. NM_001343327.1 → NP_001330132.1  ankyrin [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9LYA6
    Nucleotide Protein
    Heading Accession and Version

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