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    Ribosomal protein S21e [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832832, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal protein S21e
    Primary source
    TAIR:AT5G27700
    Locus tag
    AT5G27700
    See related
    Araport:AT5G27700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1G16.30; T1G16_30
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (9807236..9808513, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RECQ helicase SIM Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene pseudo Neighboring gene T-box protein Neighboring gene tRNA-Glu

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Balance between Cytosolic and Chloroplast Translation Affects Leaf Variegation. Wang R, et al. Plant Physiol, 2018 Jan. PMID 29142022, Free PMC Article
    2. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
    3. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_122652.7

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of cytosolic small ribosomal subunit HDA PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    Ribosomal protein S21e
    NP_198122.4
    • Ribosomal protein S21e; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21e, conserved site (InterPro:IPR018279), Ribosomal protein S21e (InterPro:IPR001931); BEST Arabidopsis thaliana protein match is: Ribosomal protein S21e (TAIR:AT3G53890.2); Has 660 Blast hits to 660 proteins in 258 species: Archae - 0; Bacteria - 0; Metazoa - 293; Fungi - 137; Plants - 120; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      9807236..9808513 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122652.7 → NP_198122.4  Ribosomal protein S21e [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198122.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0JPY2, F4K4E1, Q3E902
      UniProtKB/TrEMBL
      A0A178UBS9, A0A5S9Y7T4, Q8LCB7
      Conserved Domains (1) summary
      pfam01249
      Location:1 → 77
      Ribosomal_S21e; Ribosomal protein S21e
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3E902.2

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