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    TRS120 TRS120 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830971, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TRS120
    Official Full Name
    TRS120
    Primary source
    TAIR:AT5G11040
    Locus tag
    AT5G11040
    See related
    Araport:AT5G11040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtTRS120; T5K6.30; T5K6_30; VAN4; VASCULAR NETWORK DEFECTIVE 4
    Summary
    Encodes a tethering factor required for cell plate biogenesis.
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    Genomic context

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    See TRS120 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (3495195..3500945)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Pre-mRNA cleavage complex II protein family Neighboring gene Protein kinase superfamily protein Neighboring gene aberrant root formation protein Neighboring gene myb domain protein 64 Neighboring gene homeobox protein knotted-1-like 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Tethering factors required for cytokinesis in Arabidopsis. Thellmann M, et al. Plant Physiol, 2010 Oct. PMID 20713617, Free PMC Article
    2. Regulation of adaptive growth decisions via phosphorylation of the TRAPPII complex in Arabidopsis. Wiese C, et al. bioRxiv, 2023 Nov 7. PMID 37986925, Free PMC Article
    3. VAN4 encodes a putative TRS120 that is required for normal cell growth and vein development in Arabidopsis. Naramoto S, et al. Plant Cell Physiol, 2014 Apr. PMID 24443495
    4. A specific role for Arabidopsis TRAPPII in post-Golgi trafficking that is crucial for cytokinesis and cell polarity. Qi X, et al. Plant J, 2011 Oct. PMID 21689172
    5. Plant cytokinesis is orchestrated by the sequential action of the TRAPPII and exocyst tethering complexes. Rybak K, et al. Dev Cell, 2014 Jun 9. PMID 24882377

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. VAN4-mediated exocytosis at the trans Golgi network plays important roles in plant vascular development and cell growth in shoot and root.[VAN4]
      Title: VAN4 encodes a putative TRS120 that is required for normal cell growth and vein development in Arabidopsis.
    2. Disruptions of AtTRS120 or AtTRS130 result in defective cytokinesis and cell polarity in embryogenesis and seedling development. Post-Golgi trafficking to the cell plate and to the cell wall, but not to the vacuole, is impaired.
      Title: A specific role for Arabidopsis TRAPPII in post-Golgi trafficking that is crucial for cytokinesis and cell polarity.
    3. AtTRS120 is required for cell plate assembly.
      Title: Tethering factors required for cytokinesis in Arabidopsis.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_121142.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell plate assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within cytokinesis by cell plate formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in early endosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane HDA PubMed 
    located_in trans-Golgi network IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TRS120
    NP_196665.1
    • TRS120; CONTAINS InterPro DOMAIN/s: Transport protein Trs120 (InterPro:IPR013935); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3495195..3500945
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121142.3 → NP_196665.1  TRS120 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196665.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FY61
      UniProtKB/TrEMBL
      A0A178UTS6, A0A654G0A2
      Conserved Domains (1) summary
      pfam08626
      Location:11 → 756
      TRAPPC9-Trs120; Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FY61.1

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