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    SBP1 S-ribonuclease binding protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841106, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SBP1
    Official Full Name
    S-ribonuclease binding protein 1
    Primary source
    TAIR:AT1G45976
    Locus tag
    AT1G45976
    See related
    Araport:AT1G45976
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2G19.22; F2G19_22; S-ribonuclease binding protein 1
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    Genomic context

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    See SBP1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (17199314..17200841)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_103601.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    S-ribonuclease binding protein 1
    NP_175141.1
    • S-ribonuclease binding protein 1 (SBP1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT1G60610.3); Has 1148 Blast hits to 1148 proteins in 158 species: Archae - 2; Bacteria - 4; Metazoa - 532; Fungi - 2; Plants - 446; Viruses - 53; Other Eukaryotes - 109 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17199314..17200841
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103601.3 → NP_175141.1  S-ribonuclease binding protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175141.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WK23, A0A5S9WMP4, Q9FEA0
      Conserved Domains (3) summary
      cd00162
      Location:279 → 313
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      pfam13920
      Location:277 → 315
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
      cl21462
      Location:186 → 219
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
    Nucleotide Protein
    Heading Accession and Version

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