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    Smim23 small integral membrane protein 23 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 360508, updated on 9-Dec-2024

    Summary

    Official Symbol
    Smim23provided by RGD
    Official Full Name
    small integral membrane protein 23provided by RGD
    Primary source
    RGD:1306625
    See related
    EnsemblRapid:ENSRNOG00000027196 AllianceGenome:RGD:1306625
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1306625
    Summary
    Orthologous to human SMIM23 (small integral membrane protein 23). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 492.1) See more
    Orthologs
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    Genomic context

    See Smim23 in Genome Data Viewer
    Location:
    10q12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (17907716..17911350, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (17403456..17407091, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (17717599..17721233, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120095062 Neighboring gene uncharacterized LOC120095061 Neighboring gene F-box and WD repeat domain containing 11 Neighboring gene uncharacterized LOC120095064 Neighboring gene uncharacterized LOC134480660

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    small integral membrane protein 23

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108271.1NP_001101741.1  small integral membrane protein 23

      See identical proteins and their annotated locations for NP_001101741.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473948
      UniProtKB/TrEMBL
      A6HDG0, D4A0X0
      Related
      ENSRNOP00000038766.6, ENSRNOT00000031337.6
      Conserved Domains (1) summary
      pfam15466
      Location:1135
      DUF4635; Domain of unknown function (DUF4635)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      17907716..17911350 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)