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    ZFP11 zinc finger protein 11 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818842, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ZFP11
    Official Full Name
    zinc finger protein 11
    Primary source
    TAIR:AT2G42410
    Locus tag
    AT2G42410
    See related
    Araport:AT2G42410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATZFP11; MHK10.13; MHK10_13; zinc finger protein 11; ZINC FINGER PROTEIN 11
    Summary
    Encodes a zinc finger protein ZFP11. Overexpression of ZFP11 causes mortality and a deformed phenotype.
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    Genomic context

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    See ZFP11 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (17657824..17658976)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene vascular plant one zinc finger protein 2 Neighboring gene ncRNA Neighboring gene tRNA-Gly Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The TOPLESS interactome: a framework for gene repression in Arabidopsis. Causier B, et al. Plant Physiol, 2012 Jan. PMID 22065421, Free PMC Article
    2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 11
    NP_181770.1
    • zinc finger protein 11 (ZFP11); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT3G23130.1); Has 767 Blast hits to 767 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 767; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      17657824..17658976
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336972.1 → NP_001324610.1  zinc finger protein 11 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SLB8
      UniProtKB/TrEMBL
      A0A7G2EFM9
      Conserved Domains (1) summary
      pfam13912
      Location:49 → 73
      zf-C2H2_6; C2H2-type zinc finger

    2. NM_001336973.1 → NP_001324609.1  zinc finger protein 11 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0T0, A0A5S9X6V9, A0A654F2G0
      Conserved Domains (1) summary
      pfam13912
      Location:75 → 99
      zf-C2H2_6; C2H2-type zinc finger

    3. NM_129803.2 → NP_181770.1  zinc finger protein 11 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181770.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SLB8
      UniProtKB/TrEMBL
      A0A7G2EFM9
      Conserved Domains (1) summary
      pfam13912
      Location:49 → 73
      zf-C2H2_6; C2H2-type zinc finger
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SLB8.1

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