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    Yippee family putative zinc-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818600, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Yippee family putative zinc-binding protein
    Primary source
    TAIR:AT2G40110
    Locus tag
    AT2G40110
    See related
    Araport:AT2G40110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F27I1.3; F27I1_3
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (16747831..16749590)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Alpha/beta hydrolase related protein Neighboring gene light harvesting complex photosystem II Neighboring gene Pollen Ole e 1 allergen and extensin family protein Neighboring gene Phosphoinositide-specific phospholipase C family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001336823.1
    NM_129569.5
    NM_201916.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Yippee family putative zinc-binding protein
    NP_181540.1
    • Yippee family putative zinc-binding protein; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT3G11230.2); Has 989 Blast hits to 989 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 470; Fungi - 205; Plants - 239; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
    NP_973645.1
    • Yippee family putative zinc-binding protein; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT3G08990.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16747831..16749590
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336822.1 → NP_001324481.1  Yippee family putative zinc-binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0A7

    2. NM_129569.5 → NP_181540.1  Yippee family putative zinc-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181540.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VZP1, Q8LE51
      Conserved Domains (1) summary
      cl13152
      Location:13 → 106
      RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains

    3. NM_001336823.1 → NP_001324480.1  Yippee family putative zinc-binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0A7

    4. NM_201916.2 → NP_973645.1  Yippee family putative zinc-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973645.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IGY8
      Conserved Domains (1) summary
      cl13152
      Location:13 → 101
      RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
    Nucleotide Protein
    Heading Accession and Version

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