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    Immunoglobulin E-set superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837759, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Immunoglobulin E-set superfamily protein
    Primary source
    TAIR:AT1G12070
    Locus tag
    AT1G12070
    See related
    Araport:AT1G12070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12F1.5; F12F1_5
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (4078547..4080236, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene BCL-2-associated athanogene 5 Neighboring gene uncharacterized protein Neighboring gene Vacuolar calcium-binding protein-like protein Neighboring gene extensin-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_101079.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables Rho GDP-dissociation inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in Rho protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Immunoglobulin E-set superfamily protein
    NP_172671.1
    • Immunoglobulin E-set superfamily protein; FUNCTIONS IN: Rho GDP-dissociation inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), RHO protein GDP dissociation inhibitor (InterPro:IPR000406); BEST Arabidopsis thaliana protein match is: Immunoglobulin E-set superfamily protein (TAIR:AT1G62450.1); Has 658 Blast hits to 658 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 322; Fungi - 164; Plants - 123; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4078547..4080236 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101079.2 → NP_172671.1  Immunoglobulin E-set superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172671.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W8J7, O65371
      Conserved Domains (1) summary
      pfam02115
      Location:48 → 221
      Rho_GDI; RHO protein GDP dissociation inhibitor
    Nucleotide Protein
    Heading Accession and Version

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