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    CHR34 chromatin remodeling 34 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816684, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CHR34
    Official Full Name
    chromatin remodeling 34
    Primary source
    TAIR:AT2G21450
    Locus tag
    AT2G21450
    See related
    Araport:AT2G21450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    chromatin remodeling 34; F3K23.21; F3K23_21
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    Genomic context

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    See CHR34 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (9179410..9183037, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene IBR domain containing protein Neighboring gene Papain family cysteine protease Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene SNF2 domain CLASSY-like protein Neighboring gene ncRNA Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001335754.1
    NM_127717.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in gene silencing by siRNA-directed DNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    chromatin remodeling 34
    NP_179740.1
    • chromatin remodeling 34 (CHR34); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein (TAIR:AT2G16390.1); Has 13841 Blast hits to 12186 proteins in 1498 species: Archae - 60; Bacteria - 3626; Metazoa - 3317; Fungi - 3335; Plants - 1269; Viruses - 195; Other Eukaryotes - 2039 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9179410..9183037 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335753.1 → NP_001325209.1  chromatin remodeling 34 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNZ8, A0A1P8B2I9

    2. NM_127717.2 → NP_179740.1  chromatin remodeling 34 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179740.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNZ8, Q9SJT3
      Conserved Domains (3) summary
      pfam00176
      Location:268 → 587
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:621 → 738
      Helicase_C; Helicase conserved C-terminal domain
      cl21455
      Location:264 → 412
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    3. NM_001335754.1 → NP_001325208.1  chromatin remodeling 34 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNZ8, A0A1P8B2G9
    Nucleotide Protein
    Heading Accession and Version

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