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    PLAT2 Lipase/lipooxygenase, PLAT/LH2 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816751, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PLAT2
    Official Full Name
    Lipase/lipooxygenase, PLAT/LH2 family protein
    Primary source
    TAIR:AT2G22170
    Locus tag
    AT2G22170
    See related
    Araport:AT2G22170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    PLAT domain protein 2; T26C19.17; T26C19_17
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    Genomic context

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    See PLAT2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (9426796..9428170, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ECA1 gametogenesis family protein Neighboring gene Cysteine proteinases superfamily protein Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. Giacomelli L, et al. Plant Physiol, 2006 Jun. PMID 16648217, Free PMC Article
    2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_127785.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in secretory vesicle HDA PubMed 
    located_in thylakoid HDA PubMed 
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Lipase/lipooxygenase, PLAT/LH2 family protein
    NP_565527.1
    • Lipase/lipooxygenase, PLAT/LH2 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976); BEST Arabidopsis thaliana protein match is: Lipase/lipooxygenase, PLAT/LH2 family protein (TAIR:AT4G39730.1); Has 190 Blast hits to 181 proteins in 41 species: Archae - 0; Bacteria - 2; Metazoa - 36; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9426796..9428170 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127785.4 → NP_565527.1  Lipase/lipooxygenase, PLAT/LH2 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565527.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LEG8, Q9SIE7
      UniProtKB/TrEMBL
      A0A178VUI1, A0A5S9X0I1, A0A654EWM5
      Conserved Domains (1) summary
      cd01754
      Location:31 → 159
      PLAT_plant_stress; PLAT/LH2 domain of plant-specific single domain protein family with unknown function. Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SIE7.1

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