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    integral membrane protein (Protein of unknown function DUF92, transmembrane) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844198, updated on 18-Sep-2024

    Summary

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    Official Full Name
    integral membrane protein (Protein of unknown function DUF92, transmembrane)
    Primary source
    TAIR:AT1G78620
    Locus tag
    AT1G78620
    See related
    Araport:AT1G78620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T30F21.5; T30F21_5
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (29573657..29575801, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene light-regulated zinc finger protein 1 Neighboring gene mechanosensitive channel of small conductance-like 6 Neighboring gene Ribosomal protein L13 family protein Neighboring gene B3 domain protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Phytol Phosphorylation Pathway Is Essential for the Biosynthesis of Phylloquinone, which Is Required for Photosystem I Stability in Arabidopsis. Wang L, et al. Mol Plant, 2017 Jan 9. PMID 28007557
    2. Integral membrane proteins of the chloroplast envelope: identification and subcellular localization of new transporters. Ferro M, et al. Proc Natl Acad Sci U S A, 2002 Aug 20. PMID 12177442, Free PMC Article
    3. Remobilization of Phytol from Chlorophyll Degradation Is Essential for Tocopherol Synthesis and Growth of Arabidopsis. Vom Dorp K, et al. Plant Cell, 2015 Oct. PMID 26452599, Free PMC Article
    4. Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana. Ferro M, et al. Mol Cell Proteomics, 2003 May. PMID 12766230
    5. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. VTE6 represents the missing phytyl-phosphate kinase, linking phytol release from chlorophyll with tocopherol synthesis.
      Title: Remobilization of Phytol from Chlorophyll Degradation Is Essential for Tocopherol Synthesis and Growth of Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_106509.4
    NM_202442.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phytol kinase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phytol metabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in vitamin E biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in vitamin E biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in vitamin K biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast inner membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion HDA PubMed 
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    integral membrane protein (Protein of unknown function DUF92, transmembrane)
    NP_565184.1
    • Protein of unknown function DUF92, transmembrane; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794); Has 865 Blast hits to 865 proteins in 301 species: Archae - 133; Bacteria - 238; Metazoa - 78; Fungi - 68; Plants - 85; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink).
    NP_974171.1
    • Protein of unknown function DUF92, transmembrane; LOCATED IN: chloroplast, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29573657..29575801 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106509.4 → NP_565184.1  integral membrane protein (Protein of unknown function DUF92, transmembrane) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565184.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LBN5, Q9SYM0
      UniProtKB/TrEMBL
      A0A178W477, A0A5S9WVI1, A0A7G2E9W7
      Conserved Domains (1) summary
      pfam01940
      Location:93 → 317
      DUF92; Integral membrane protein DUF92

    2. NM_202442.2 → NP_974171.1  integral membrane protein (Protein of unknown function DUF92, transmembrane) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974171.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WVI1, A0A7G2E9W7, F4IBS8
      Conserved Domains (1) summary
      pfam01940
      Location:108 → 324
      DUF92; Integral membrane protein DUF92
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SYM0.1

    Gene LinkOut

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