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    Putative AT-hook DNA-binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838011, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Putative AT-hook DNA-binding family protein
    Primary source
    TAIR:AT1G14490
    Locus tag
    AT1G14490
    See related
    Araport:AT1G14490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AHL28; AT-hook motif nuclear localized protein 28; F14L17.27; F14L17_27
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (4958445..4959529, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Ankyrin repeat family protein Neighboring gene Ankyrin repeat family protein Neighboring gene alfin-like 7 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_101316.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables minor groove of adenine-thymine-rich DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Putative AT-hook DNA-binding family protein
    NP_172901.1
    • Predicted AT-hook DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: Predicted AT-hook DNA-binding family protein (TAIR:AT5G49700.1); Has 747 Blast hits to 743 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 747; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4958445..4959529 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332121.1 → NP_001321512.1  Putative AT-hook DNA-binding family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AR37, A0A5S9UE45, A0A654E9Q4
      Conserved Domains (1) summary
      cd11378
      Location:51 → 168
      DUF296; Domain of unknown function found in archaea, bacteria, and plants

    2. NM_101316.3 → NP_172901.1  Putative AT-hook DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172901.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M9R4
      UniProtKB/TrEMBL
      A0A178W2K6, A0A654E9Q4
      Conserved Domains (1) summary
      cd11378
      Location:32 → 149
      DUF296; Domain of unknown function found in archaea, bacteria, and plants
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M9R4.1

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