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    HIT-type Zinc finger family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 5007664, updated on 18-Sep-2024

    Summary

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    Official Full Name
    HIT-type Zinc finger family protein
    Primary source
    TAIR:AT1G04945
    Locus tag
    AT1G04945
    See related
    Araport:AT1G04945
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (1399174..1403112)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene sucrose phosphate synthase 3F Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene translocon at the inner envelope membrane of chloroplasts 20 Neighboring gene TATA BOX ASSOCIATED FACTOR II 59 Neighboring gene golgin family A protein (DUF1664) Neighboring gene lipid-binding serum glycoprotein family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001083990.1
    NM_001083991.2
    NM_001331506.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    HIT-type Zinc finger family protein
    NP_001077459.1
    • HIT-type Zinc finger family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529); Has 408 Blast hits to 406 proteins in 188 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 151; Plants - 52; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
    NP_001077460.1
    • HIT-type Zinc finger family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529); Has 408 Blast hits to 406 proteins in 188 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 151; Plants - 52; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
    NP_001184910.1
    • HIT-type Zinc finger family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein ycf60 (InterPro:IPR019109), Zinc finger, HIT-type (InterPro:IPR007529); BEST Arabidopsis thaliana protein match is: translocon at the inner envelope membrane of chloroplasts 20 (TAIR:AT1G04940.1).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1399174..1403112
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001197981.1 → NP_001184910.1  HIT-type Zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001184910.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EBX1, F4I765
      Conserved Domains (2) summary
      cl15935
      Location:59 → 254
      TIC20; Chloroplast import apparatus Tic20-like
      pfam04438
      Location:257 → 284
      zf-HIT; HIT zinc finger

    2. NM_001083991.2 → NP_001077460.1  HIT-type Zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077460.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WNX8, Q0WTZ4
      Conserved Domains (1) summary
      pfam04438
      Location:5 → 32
      zf-HIT; HIT zinc finger

    3. NM_001331506.1 → NP_001320737.1  HIT-type Zinc finger family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ANR0, A0A7G2DQE1
      Conserved Domains (1) summary
      pfam04438
      Location:5 → 32
      zf-HIT; HIT zinc finger

    4. NM_001083990.1 → NP_001077459.1  HIT-type Zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077459.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MRX6
      Conserved Domains (1) summary
      pfam04438
      Location:5 → 32
      zf-HIT; HIT zinc finger
    Nucleotide Protein
    Heading Accession and Version

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