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    tubulin-tyrosine ligase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844091, updated on 18-Sep-2024

    Summary

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    Official Full Name
    tubulin-tyrosine ligase
    Primary source
    TAIR:AT1G77550
    Locus tag
    AT1G77550
    See related
    Araport:AT1G77550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T5M16.14; T5M16_14
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    15
    Sequence:
    Chromosome: 1; NC_003070.9 (29138277..29143050, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene defensin-like protein Neighboring gene O-methyltransferase family protein Neighboring gene Acyl-CoA N-acyltransferases (NAT) superfamily protein Neighboring gene tRNA-Gln Neighboring gene Winged helix-turn-helix transcription repressor DNA-binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_106404.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein modification process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tubulin-tyrosine ligase
    NP_177879.3
    • tubulin-tyrosine ligases;tubulin-tyrosine ligases; FUNCTIONS IN: tubulin-tyrosine ligase activity; INVOLVED IN: protein modification process; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Tubulin-tyrosine ligase (InterPro:IPR004344); Has 1977 Blast hits to 1869 proteins in 143 species: Archae - 0; Bacteria - 8; Metazoa - 1192; Fungi - 29; Plants - 92; Viruses - 0; Other Eukaryotes - 656 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29138277..29143050 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106404.6 → NP_177879.3  tubulin-tyrosine ligase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177879.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E6W0, Q6IDC7
      Conserved Domains (3) summary
      cd00116
      Location:147 → 314
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:142 → 163
      LRR_RI; leucine-rich repeat [structural motif]
      cl17255
      Location:574 → 827
      ATP-grasp_4; ATP-grasp domain
    Nucleotide Protein
    Heading Accession and Version

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