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    Hop1 stress-inducible protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837781, updated on 18-Sep-2024

    Summary

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    Official Symbol
    Hop1
    Official Full Name
    stress-inducible protein
    Primary source
    TAIR:AT1G12270
    Locus tag
    AT1G12270
    See related
    Araport:AT1G12270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5O11.2; F5O11_2
    Summary
    Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.
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    Genomic context

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    See Hop1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (4172035..4174730)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene NAC 007 Neighboring gene ncRNA Neighboring gene LRR and NB-ARC domains-containing disease resistance protein Neighboring gene Disease resistance protein (CC-NBS-LRR class) family Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Study of receptor-chaperone interactions using the optical technique of spectroscopic ellipsometry. Kriechbaumer V, et al. Biophys J, 2011 Jul 20. PMID 21767504, Free PMC Article
    2. A user-friendly platform for yeast two-hybrid library screening using next generation sequencing. Erffelinck ML, et al. PLoS One, 2018. PMID 30576311, Free PMC Article
    3. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
    4. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    5. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_101099.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables Hsp90 protein binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables preprotein binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in chaperone-mediated protein complex assembly ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in extracellular region HDA PubMed 

    General protein information

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    Preferred Names
    stress-inducible protein
    NP_172691.1
    • stress-inducible protein, putative; FUNCTIONS IN: binding; INVOLVED IN: response to stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G62740.1); Has 37869 Blast hits to 17250 proteins in 1367 species: Archae - 1337; Bacteria - 11482; Metazoa - 9184; Fungi - 2650; Plants - 3694; Viruses - 39; Other Eukaryotes - 9483 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4172035..4174730
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101099.5 → NP_172691.1  stress-inducible protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172691.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q7Y1Y9, Q9LNB6
      UniProtKB/TrEMBL
      A0A178WM19, A0A5S9U0W1
      Conserved Domains (4) summary
      PLN03088
      Location:1 → 101
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      TIGR00990
      Location:250 → 487
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      sd00006
      Location:387 → 411
      TPR; TPR repeat [structural motif]
      pfam17830
      Location:133 → 187
      STI1; STI1 domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LNB6.1

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