U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PUT5 Amino acid permease family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821492, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    PUT5
    Official Full Name
    Amino acid permease family protein
    Primary source
    TAIR:AT3G19553
    Locus tag
    AT3G19553
    See related
    Araport:AT3G19553
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    POLYAMINE UPTAKE TRANSPORTER 5
    Summary
    Encodes POLYAMINE UPTAKE TRANSPORTER 5, an amino acid permease family protein.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PUT5 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (6790731..6792988, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene glutamate racemase Neighboring gene uncharacterized protein Neighboring gene F-box family protein Neighboring gene ncRNA Neighboring gene F-box/associated interaction domain protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Altered expression of polyamine transporters reveals a role for spermidine in the timing of flowering and other developmental response pathways. Ahmed S, et al. Plant Sci, 2017 May. PMID 28330558
    2. Kinetic and phylogenetic analysis of plant polyamine uptake transporters. Mulangi V, et al. Planta, 2012 Oct. PMID 22711282
    3. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
    4. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. Chen J, et al. Front Plant Sci, 2012. PMID 22737156, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_112845.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables basic amino acid transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables polyamine transmembrane transporter activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables polyamine transmembrane transporter activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within polyamine transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Amino acid permease family protein
    NP_188589.1
    • Amino acid permease family protein; FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport, transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: Amino acid permease family protein (TAIR:AT1G31830.1); Has 17325 Blast hits to 17313 proteins in 2020 species: Archae - 295; Bacteria - 14688; Metazoa - 803; Fungi - 534; Plants - 429; Viruses - 0; Other Eukaryotes - 576 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6790731..6792988 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112845.4 → NP_188589.1  Amino acid permease family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188589.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LH39
      UniProtKB/TrEMBL
      A0A178VGC5, A0A5S9XDT9
      Conserved Domains (1) summary
      COG0531
      Location:11 → 429
      PotE; Amino acid transporter [Amino acid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LH39.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools