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    Galactosyltransferase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840236, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Galactosyltransferase family protein
    Primary source
    TAIR:AT1G33430
    Locus tag
    AT1G33430
    See related
    Araport:AT1G33430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10C21.10; F10C21_10
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (12124237..12126481, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SUPPRESSOR OF AUXIN RESISTANCE1 Neighboring gene ncRNA Neighboring gene RING/FYVE/PHD zinc finger superfamily protein Neighboring gene Major facilitator superfamily protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. KNS4/UPEX1: A Type II Arabinogalactan β-(1,3)-Galactosyltransferase Required for Pollen Exine Development. Suzuki T, et al. Plant Physiol, 2017 Jan. PMID 27837085, Free PMC Article
    2. Role of Glycosyltransferases in Pollen Wall Primexine Formation and Exine Patterning. Li WL, et al. Plant Physiol, 2017 Jan. PMID 27495941, Free PMC Article
    3. A large-scale genetic screen in Arabidopsis to identify genes involved in pollen exine production. Dobritsa AA, et al. Plant Physiol, 2011 Oct. PMID 21849515, Free PMC Article
    4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. UPEX1 and IRX9L function in exine patterning in developing microspores by modulating the synthesis or modification of components of the primexine wall layer. Data support a model in which xylan and AGP cell wall components synthesized in tapetum are incorporated into the primexine wall and play roles in primexine development and anchoring of sporopollenin to the microspore surface early in microspore development. [UPEX1]
      Title: Role of Glycosyltransferases in Pollen Wall Primexine Formation and Exine Patterning.
    2. These data demonstrate that defects in arabinogalactan-protein /pectic glycans, caused by disruption of KNS4 function, impact pollen development and viability in Arabidopsis.[UPEX1]
      Title: KNS4/UPEX1: A Type II Arabinogalactan β-(1,3)-Galactosyltransferase Required for Pollen Exine Development.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001198201.1
    NM_001333044.1
    NM_103068.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables beta-1,3-galactosyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables hexosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within non-classical arabinogalactan protein metabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen exine formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Galactosyltransferase family protein
    NP_001185130.1
    • Galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: pollen exine formation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT1G32930.1).
    NP_174609.1
    • Galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: pollen exine formation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT1G32930.1); Has 1545 Blast hits to 1534 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 942; Fungi - 2; Plants - 571; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      12124237..12126481 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198201.1 → NP_001185130.1  Galactosyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185130.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DXP3, F4HR76
      Conserved Domains (1) summary
      PLN03193
      Location:7 → 401
      PLN03193; beta-1,3-galactosyltransferase; Provisional

    2. NM_103068.2 → NP_174609.1  Galactosyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174609.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C809
      UniProtKB/TrEMBL
      A0A7G2DXP3, W8QP76
      Conserved Domains (3) summary
      PLN03193
      Location:7 → 393
      PLN03193; beta-1,3-galactosyltransferase; Provisional
      pfam13334
      Location:7 → 103
      DUF4094; Domain of unknown function (DUF4094)
      cl21608
      Location:138 → 334
      Galactosyl_T; Galactosyltransferase

    3. NM_001333044.1 → NP_001322782.1  Galactosyltransferase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AV17
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C809.1

    Gene LinkOut

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