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    exostosin family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824932, updated on 18-Sep-2024

    Summary

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    Official Full Name
    exostosin family protein
    Primary source
    TAIR:AT3G57630
    Locus tag
    AT3G57630
    See related
    Araport:AT3G57630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    14
    Sequence:
    Chromosome: 3; NC_003074.8 (21339274..21343965, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene adenylosuccinate synthase Neighboring gene glyoxal oxidase-related protein Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and evolution of a plant cell wall specific glycoprotein glycosyl transferase, ExAD. Møller SR, et al. Sci Rep, 2017 Mar 30. PMID 28358137, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001339880.1
    NM_115623.6
    NM_202723.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycosyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within extensin metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein glycosylation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within root hair cell development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    exostosin family protein
    NP_191322.3
    • exostosin family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EGF, extracellular (InterPro:IPR013111), Exostosin-like (InterPro:IPR004263), EGF-like (InterPro:IPR006210), EGF-like, type 3 (InterPro:IPR000742), EGF-like region, conserved site (InterPro:IPR013032); BEST Arabidopsis thaliana protein match is: FRA8 homolog (TAIR:AT5G22940.1); Has 4457 Blast hits to 2809 proteins in 140 species: Archae - 0; Bacteria - 2; Metazoa - 2721; Fungi - 13; Plants - 998; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink).
    NP_974452.1
    • exostosin family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263), EGF-like (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: FRA8 homolog (TAIR:AT5G22940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21339274..21343965 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115623.6 → NP_191322.3  exostosin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191322.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VD69, A0A654FIP1, Q6NKR6
      Conserved Domains (2) summary
      pfam03016
      Location:344 → 699
      Exostosin; Exostosin family
      pfam07974
      Location:124 → 149
      EGF_2; EGF-like domain

    2. NM_001339880.1 → NP_001327768.1  exostosin family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VD69, A0A654FIP1, Q6NKR6
      Conserved Domains (2) summary
      pfam03016
      Location:344 → 699
      Exostosin; Exostosin family
      pfam07974
      Location:124 → 149
      EGF_2; EGF-like domain

    3. NM_202723.1 → NP_974452.1  exostosin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974452.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VD69, Q0WWD8
      Conserved Domains (2) summary
      pfam03016
      Location:342 → 697
      Exostosin; Exostosin family
      pfam07974
      Location:277 → 301
      EGF_2; EGF-like domain
    Nucleotide Protein
    Heading Accession and Version

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