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    LSM6A Small nuclear ribonucleoprotein family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825150, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LSM6A
    Official Full Name
    Small nuclear ribonucleoprotein family protein
    Primary source
    TAIR:AT3G59810
    Locus tag
    AT3G59810
    See related
    Araport:AT3G59810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    SM-like 6A
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    Genomic context

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    See LSM6A in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (22096469..22097966)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Rhodanese/Cell cycle control phosphatase superfamily protein Neighboring gene MAP kinase 10 Neighboring gene stress response protein Neighboring gene LETM1-like protein Neighboring gene Integrin-linked protein kinase family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interactome analysis reveals versatile functions of Arabidopsis COLD SHOCK DOMAIN PROTEIN 3 in RNA processing within the nucleus and cytoplasm. Kim MH, et al. Cell Stress Chaperones, 2013 Jul. PMID 23334891, Free PMC Article
    2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001340000.1
    NM_001340001.1
    NM_115843.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Small nuclear ribonucleoprotein family protein
    NP_191540.1
    • Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT2G43810.2); Has 1159 Blast hits to 1159 proteins in 301 species: Archae - 313; Bacteria - 0; Metazoa - 297; Fungi - 260; Plants - 135; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22096469..22097966
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115843.3 → NP_191540.1  Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191540.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LSF1, Q8LCS5, Q9M1Z3
      UniProtKB/TrEMBL
      A0A178V8R3, A0A5S9XMJ2
      Conserved Domains (1) summary
      cd01726
      Location:14 → 81
      LSm6; Like-Sm protein 6

    2. NM_001340000.1 → NP_001327468.1  Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LSF1, Q8LCS5, Q9M1Z3
      UniProtKB/TrEMBL
      A0A178V8R3, A0A5S9XMJ2

    3. NM_001340001.1 → NP_001327469.1  Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LSF1, Q8LCS5, Q9M1Z3
      UniProtKB/TrEMBL
      A0A178V8R3, A0A5S9XMJ2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M1Z3.1

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