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    AGAL1 alpha-galactosidase 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830736, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AGAL1
    Official Full Name
    alpha-galactosidase 1
    Primary source
    TAIR:AT5G08380
    Locus tag
    AT5G08380
    See related
    Araport:AT5G08380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    alpha-galactosidase 1; AtAGAL1; F8L15.110; F8L15_110
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    Genomic context

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    See AGAL1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    15
    Sequence:
    Chromosome: 5; NC_003076.8 (2694669..2697781, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Nucleotidylyl transferase superfamily protein Neighboring gene GRAM domain-containing protein / ABA-responsive protein-like protein Neighboring gene Stu1, putative (DUF789) Neighboring gene alpha-galactosidase 2 Neighboring gene transmembrane protein, putative (DUF 3339) Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene structural maintenance of chromosomes-like protein, putative (DUF3531)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Heterologous expression and characterization of an Arabidopsis β-l-arabinopyranosidase and α-d-galactosidases acting on β-l-arabinopyranosyl residues. Imaizumi C, et al. J Exp Bot, 2017 Jul 20. PMID 28981776, Free PMC Article
    2. Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics. Boudart G, et al. Proteomics, 2005 Jan. PMID 15593128
    3. Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study. Bindschedler LV, et al. Phytochemistry, 2008 Jul. PMID 18538804
    4. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
    5. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. At5g08380.1 role in the hydrolysis of beta-l-arabinopyranosyl residues
      Title: Heterologous expression and characterization of an Arabidopsis β-l-arabinopyranosidase and α-d-galactosidases acting on β-l-arabinopyranosyl residues.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Homology

    NM_001342998.1
    NM_120922.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables alpha-galactosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in apoplast HDA PubMed 
    located_in plant-type cell wall HDA PubMed 
    located_in secretory vesicle HDA PubMed 

    General protein information

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    Preferred Names
    alpha-galactosidase 1
    NP_196455.1
    • alpha-galactosidase 1 (AGAL1); FUNCTIONS IN: alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process, metabolic process, lactose catabolic process; LOCATED IN: apoplast, cell wall, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 27 (InterPro:IPR002241), Aldolase-type TIM barrel (InterPro:IPR013785), Glycoside hydrolase, clan GH-D (InterPro:IPR000111), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: alpha-galactosidase 2 (TAIR:AT5G08370.1); Has 1677 Blast hits to 1666 proteins in 372 species: Archae - 6; Bacteria - 673; Metazoa - 331; Fungi - 272; Plants - 227; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2694669..2697781 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120922.5 → NP_196455.1  alpha-galactosidase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196455.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RWB9, Q9FT97
      UniProtKB/TrEMBL
      A0A178UB94, A0A5S9Y375, A0A654FZD1
      Conserved Domains (1) summary
      PLN02692
      Location:1 → 410
      PLN02692; alpha-galactosidase

    2. NM_001342998.1 → NP_001332077.1  alpha-galactosidase 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BFT2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FT97.1

    Gene LinkOut

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