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    NRPE7 RNA polymerase Rpb7-like, N-terminal domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827116, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NRPE7
    Official Full Name
    RNA polymerase Rpb7-like, N-terminal domain-containing protein
    Primary source
    TAIR:AT4G14660
    Locus tag
    AT4G14660
    See related
    Araport:AT4G14660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3370C; FCAALL.283
    Summary
    Non-catalytic subunit specific to DNA-directed RNA polymerase V; homologous to budding yeast RPB7
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    Genomic context

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    See NRPE7 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (8406247..8407896, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene calmodulin 8 Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene casein lytic proteinase B2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RNA polymerase V targets transcriptional silencing components to promoters of protein-coding genes. Zheng Q, et al. Plant J, 2013 Jan. PMID 23013441, Free PMC Article
    2. A protein complex required for polymerase V transcripts and RNA- directed DNA methylation in Arabidopsis. Law JA, et al. Curr Biol, 2010 May 25. PMID 20409711, Free PMC Article
    3. Domains rearranged methyltransferase3 controls DNA methylation and regulates RNA polymerase V transcript abundance in Arabidopsis. Zhong X, et al. Proc Natl Acad Sci U S A, 2015 Jan 20. PMID 25561521, Free PMC Article
    4. SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV. Law JA, et al. PLoS Genet, 2011 Jul. PMID 21811420, Free PMC Article
    5. Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II. Ream TS, et al. Mol Cell, 2009 Jan 30. PMID 19110459, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001340952.1
    NM_001340953.1
    NM_117548.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in DNA-templated transcription initiation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of RNA polymerase V complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA polymerase Rpb7-like, N-terminal domain-containing protein
    NP_193202.2
    • NRPE7; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase V complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), RNA polymerase Rpb7, N-terminal (InterPro:IPR005576); BEST Arabidopsis thaliana protein match is: RNA polymerase Rpb7-like, N-terminal domain (TAIR:AT3G22900.1); Has 678 Blast hits to 678 proteins in 287 species: Archae - 183; Bacteria - 0; Metazoa - 137; Fungi - 169; Plants - 112; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8406247..8407896 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117548.4 → NP_193202.2  RNA polymerase Rpb7-like, N-terminal domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193202.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A6QRA1, O23322
      UniProtKB/TrEMBL
      A0A178V5D6, A0A5S9XSC0
      Conserved Domains (2) summary
      cd04329
      Location:2 → 85
      RNAP_II_Rpb7_N; Rpb7, N-terminal ribonucleoprotein (RNP) domain. Rpb7 is a subunit of eukaryotic RNA polymerase (RNAP) II that is homologous to Rpc25 of RNAP III, RpoE of archaeal RNAP, and Rpa43 of eukaryotic RNAP I. Rpb7 heterodimerizes with Rpb4 and this heterodimer ...
      PTZ00162
      Location:28 → 174
      PTZ00162; DNA-directed RNA polymerase II subunit 7; Provisional

    2. NM_001340952.1 → NP_001329853.1  RNA polymerase Rpb7-like, N-terminal domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A6QRA1, O23322
      UniProtKB/TrEMBL
      A0A178V5D6, A0A5S9XSC0
      Conserved Domains (2) summary
      cd04329
      Location:2 → 85
      RNAP_II_Rpb7_N; Rpb7, N-terminal ribonucleoprotein (RNP) domain. Rpb7 is a subunit of eukaryotic RNA polymerase (RNAP) II that is homologous to Rpc25 of RNAP III, RpoE of archaeal RNAP, and Rpa43 of eukaryotic RNAP I. Rpb7 heterodimerizes with Rpb4 and this heterodimer ...
      PTZ00162
      Location:28 → 174
      PTZ00162; DNA-directed RNA polymerase II subunit 7; Provisional

    3. NM_001340953.1 → NP_001329854.1  RNA polymerase Rpb7-like, N-terminal domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A6QRA1, O23322
      UniProtKB/TrEMBL
      A0A178V5D6, A0A5S9XSC0
      Conserved Domains (2) summary
      cd04329
      Location:2 → 85
      RNAP_II_Rpb7_N; Rpb7, N-terminal ribonucleoprotein (RNP) domain. Rpb7 is a subunit of eukaryotic RNA polymerase (RNAP) II that is homologous to Rpc25 of RNAP III, RpoE of archaeal RNAP, and Rpa43 of eukaryotic RNAP I. Rpb7 heterodimerizes with Rpb4 and this heterodimer ...
      PTZ00162
      Location:28 → 174
      PTZ00162; DNA-directed RNA polymerase II subunit 7; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A6QRA1.1

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