U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Copine (Calcium-dependent phospholipid-binding protein) family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843106, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Copine (Calcium-dependent phospholipid-binding protein) family
    Primary source
    TAIR:AT1G67800
    Locus tag
    AT1G67800
    See related
    Araport:AT1G67800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12A21.7; F12A21_7
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (25420646..25423731, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Zinc-finger domain of monoamine-oxidase A repressor R1 protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene sieve element occlusion protein Neighboring gene miscRNA Neighboring gene sulfur E2

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Ubiquitin Ligases RGLG1 and RGLG5 Regulate Abscisic Acid Signaling by Controlling the Turnover of Phosphatase PP2CA. Wu Q, et al. Plant Cell, 2016 Sep. PMID 27577789, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001084318.3
    NM_001334325.1
    NM_001334326.1
    NM_105448.5
    NM_179526.4
    NM_202371.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of abscisic acid-activated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Copine (Calcium-dependent phospholipid-binding protein) family
    NP_001077787.1
    • Copine (Calcium-dependent phospholipid-binding protein) family; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase2 (TAIR:AT5G14420.2); Has 1565 Blast hits to 1560 proteins in 126 species: Archae - 0; Bacteria - 2; Metazoa - 893; Fungi - 2; Plants - 396; Viruses - 12; Other Eukaryotes - 260 (source: NCBI BLink).
    NP_001319339.1
    • Copine (Calcium-dependent phospholipid-binding protein) family; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase2 (TAIR:AT5G14420.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_564907.1
    • Copine (Calcium-dependent phospholipid-binding protein) family; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase2 (TAIR:AT5G14420.2); Has 1565 Blast hits to 1560 proteins in 126 species: Archae - 0; Bacteria - 2; Metazoa - 893; Fungi - 2; Plants - 396; Viruses - 12; Other Eukaryotes - 260 (source: NCBI BLink).
    NP_849857.1
    • Copine (Calcium-dependent phospholipid-binding protein) family; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase2 (TAIR:AT5G14420.2); Has 1564 Blast hits to 1559 proteins in 126 species: Archae - 0; Bacteria - 2; Metazoa - 894; Fungi - 2; Plants - 394; Viruses - 12; Other Eukaryotes - 260 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25420646..25423731 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179526.4 → NP_849857.1  Copine (Calcium-dependent phospholipid-binding protein) family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849857.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WN65, F4HTR6
      Conserved Domains (2) summary
      cd01459
      Location:90 → 340
      vWA_copine_like; VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. ...
      cd16729
      Location:410 → 453
      RING-HC_RGLG_plant; RING finger, HC subclass, found in RING domain ligase RGLG1, RGLG2 and similar proteins from plant

    2. NM_001334326.1 → NP_001321682.1  Copine (Calcium-dependent phospholipid-binding protein) family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WN89, A0A1P8ARN9
      Conserved Domains (1) summary
      cd01459
      Location:90 → 340
      vWA_copine_like; VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. ...

    3. NM_001084318.3 → NP_001077787.1  Copine (Calcium-dependent phospholipid-binding protein) family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077787.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LB88
      UniProtKB/TrEMBL
      A0A5S9WQP5, A0A654EM91, A0A7G2E3F4
      Conserved Domains (2) summary
      cd01459
      Location:70 → 320
      vWA_copine_like; VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. ...
      cd16729
      Location:390 → 433
      RING-HC_RGLG_plant; RING finger, HC subclass, found in RING domain ligase RGLG1, RGLG2 and similar proteins from plant

    4. NM_001334325.1 → NP_001319339.1  Copine (Calcium-dependent phospholipid-binding protein) family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LB88
      UniProtKB/TrEMBL
      A0A5S9WQP5, A0A654EM91, A0A7G2E3F4
      Conserved Domains (2) summary
      cd01459
      Location:70 → 320
      vWA_copine_like; VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. ...
      cd16729
      Location:390 → 433
      RING-HC_RGLG_plant; RING finger, HC subclass, found in RING domain ligase RGLG1, RGLG2 and similar proteins from plant

    5. NM_105448.5 → NP_564907.1  Copine (Calcium-dependent phospholipid-binding protein) family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564907.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LB88
      UniProtKB/TrEMBL
      A0A5S9WQP5, A0A654EM91, A0A7G2E3F4
      Conserved Domains (2) summary
      cd01459
      Location:70 → 320
      vWA_copine_like; VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. ...
      cd16729
      Location:390 → 433
      RING-HC_RGLG_plant; RING finger, HC subclass, found in RING domain ligase RGLG1, RGLG2 and similar proteins from plant

    6. NM_202371.2 → NP_974100.1  Copine (Calcium-dependent phospholipid-binding protein) family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974100.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LB88
      UniProtKB/TrEMBL
      A0A5S9WQP5, A0A654EM91, A0A7G2E3F4
      Conserved Domains (2) summary
      cd01459
      Location:70 → 320
      vWA_copine_like; VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. ...
      cd16729
      Location:390 → 433
      RING-HC_RGLG_plant; RING finger, HC subclass, found in RING domain ligase RGLG1, RGLG2 and similar proteins from plant
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LB88.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.