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    Tmem87b transmembrane protein 87B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362212, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tmem87bprovided by RGD
    Official Full Name
    transmembrane protein 87Bprovided by RGD
    Primary source
    RGD:1307907
    See related
    EnsemblRapid:ENSRNOG00000017443 AllianceGenome:RGD:1307907
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1307907
    Summary
    Predicted to be involved in retrograde transport, endosome to Golgi. Predicted to be located in Golgi membrane and cytosol. Predicted to be active in Golgi apparatus and membrane. Orthologous to human TMEM87B (transmembrane protein 87B). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 105.9), Lung (RPKM 104.8) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Tmem87b in Genome Data Viewer
    Location:
    3q36
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (136515155..136550644)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (116061933..116097421)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (121357787..121393443)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene anaphase promoting complex subunit 1 Neighboring gene MER proto-oncogene, tyrosine kinase Neighboring gene transfer RNA alanine (anticodon AGC) 45 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene fibulin 7

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in Golgi apparatus  
    is_active_in Golgi cisterna membrane  
    located_in Golgi membrane  
    located_in cytosol  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191854.1NP_001178783.1  transmembrane protein 87B precursor

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      A6HQ39
      Conserved Domains (1) summary
      pfam06814
      Location:175459
      Lung_7-TM_R; Lung seven transmembrane receptor

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      136515155..136550644
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039105464.2XP_038961392.1  transmembrane protein 87B isoform X1

      UniProtKB/TrEMBL
      A6HQ39, D4A7B6
      Related
      ENSRNOP00000102498.1, ENSRNOT00000134974.1
      Conserved Domains (1) summary
      pfam06814
      Location:175459
      Lung_7-TM_R; Lung seven transmembrane receptor
    2. XM_063284164.1XP_063140234.1  transmembrane protein 87B isoform X2

      UniProtKB/TrEMBL
      A6HQ39
      Related
      ENSRNOP00000023569.8, ENSRNOT00000023569.9

    RNA

    1. XR_010064665.1 RNA Sequence

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