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    Ifitm10 interferon induced transmembrane protein 10 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 293632, updated on 27-Dec-2024

    Summary

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    Official Symbol
    Ifitm10provided by RGD
    Official Full Name
    interferon induced transmembrane protein 10provided by RGD
    Primary source
    RGD:1563319
    See related
    AllianceGenome:RGD:1563319
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563319
    Summary
    Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human IFITM10 (interferon induced transmembrane protein 10). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 63.9), Muscle (RPKM 43.9) and 6 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ifitm10 in Genome Data Viewer
    Location:
    1q41
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (206936979..206954594, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (197507501..197524180, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (215521604..215538283, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene keratin associated protein 5-5 like 2 Neighboring gene keratin associated protein 5-8 Neighboring gene troponin I2, fast skeletal type Neighboring gene uncharacterized LOC120097365 Neighboring gene cathepsin D

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Evolution of vertebrate interferon inducible transmembrane proteins. Hickford D, et al. BMC Genomics, 2012 Apr 26. PMID 22537233, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    interferon induced transmembrane protein 10; interferon-induced transmembrane protein 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001432149.1 → NP_001419078.1  interferon induced transmembrane protein 10 isoform a

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A0G2JYW7

    2. NM_001432151.1 → NP_001419080.1  interferon induced transmembrane protein 10 isoform a

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A0G2JYW7

    3. NM_001432152.1 → NP_001419081.1  interferon induced transmembrane protein 10 isoform b

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001

    RNA

    1. NR_197269.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      206936979..206954594 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063279723.1 → XP_063135793.1  interferon-induced transmembrane protein 10 isoform X1

    2. XM_063279728.1 → XP_063135798.1  interferon-induced transmembrane protein 10 isoform X3

    3. XM_063279722.1 → XP_063135792.1  interferon-induced transmembrane protein 10 isoform X1

    4. XM_063279725.1 → XP_063135795.1  interferon-induced transmembrane protein 10 isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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