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    Bpifb6 BPI fold containing family B, member 6 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 311558, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Bpifb6provided by RGD
    Official Full Name
    BPI fold containing family B, member 6provided by RGD
    Primary source
    RGD:1311602
    See related
    EnsemblRapid:ENSRNOG00000013371 AllianceGenome:RGD:1311602
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Bpil3; Lplunc6
    Summary
    Predicted to enable lipid binding activity. Predicted to be located in extracellular region. Orthologous to human BPIFB6 (BPI fold containing family B member 6). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 3.0), Thymus (RPKM 0.5) and 3 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Bpifb6 in Genome Data Viewer
    Location:
    3q41
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (162841640..162855471)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (142381478..142395304)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (149382312..149396130)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene Sad1 and UNC84 domain containing 5 Neighboring gene BPI fold containing family B, member 2 Neighboring gene BPI fold containing family B, member 3 Neighboring gene BPI fold containing family B, member 4 Neighboring gene uncharacterized LOC120101760

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic and evolutionary analysis of the PLUNC gene family. Bingle CD, et al. Protein Sci, 2004 Feb. PMID 14739326, Free PMC Article
    2. Systematic nomenclature for the PLUNC/PSP/BSP30/SMGB proteins as a subfamily of the BPI fold-containing superfamily. Bingle CD, et al. Biochem Soc Trans, 2011 Aug. PMID 21787333, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    BPI fold-containing family B member 6
    Names
    bactericidal/permeability-increasing protein-like 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107791.2 → NP_001101261.2  BPI fold-containing family B member 6 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      D4AB30
      Related
      ENSRNOP00000017876.7, ENSRNOT00000017876.8

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      162841640..162855471
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063283839.1 → XP_063139909.1  BPI fold-containing family B member 6 isoform X2

      UniProtKB/TrEMBL
      D4AB30

    2. XM_063283838.1 → XP_063139908.1  BPI fold-containing family B member 6 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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