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    Baz2b bromodomain adjacent to zinc finger domain, 2B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 317627, updated on 9-Dec-2024

    Summary

    Official Symbol
    Baz2bprovided by RGD
    Official Full Name
    bromodomain adjacent to zinc finger domain, 2Bprovided by RGD
    Primary source
    RGD:1309801
    See related
    EnsemblRapid:ENSRNOG00000056984 AllianceGenome:RGD:1309801
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be located in chromatin and nucleus. Orthologous to human BAZ2B (bromodomain adjacent to zinc finger domain 2B). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 138.7), Kidney (RPKM 118.9) and 9 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Baz2b in Genome Data Viewer
    Location:
    3q21
    Exon count:
    42
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (64792984..65034547, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (44384282..44681619, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (45968845..46286915, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 Neighboring gene uncharacterized LOC134486097 Neighboring gene uncharacterized LOC108350580 Neighboring gene WD repeat, sterile alpha motif and U-box domain containing 1 Neighboring gene ADP-ribosylation factor 4, pseudogene 1 Neighboring gene uncharacterized LOC120101908 Neighboring gene RNA, U6 small nuclear 22 Neighboring gene membrane associated ring-CH-type finger 7

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA binding  
    enables metal ion binding  
    Component Evidence Code Pubs
    located_in chromatin  
    located_in nucleus  

    General protein information

    Preferred Names
    bromodomain adjacent to zinc finger domain protein 2B

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108260.1NP_001101730.1  bromodomain adjacent to zinc finger domain protein 2B

      See identical proteins and their annotated locations for NP_001101730.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473983
      UniProtKB/TrEMBL
      A0A0G2K175, A0A0G2K535, A6JF71
      Related
      ENSRNOP00000071727.2, ENSRNOT00000081302.4
      Conserved Domains (7) summary
      cd05503
      Location:20882184
      Bromo_BAZ2A_B_like; Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting ...
      smart00571
      Location:10741137
      DDT; domain in different transcription and chromosome remodeling factors
      cd15630
      Location:19552003
      PHD_BAZ2B; PHD finger found in bromodomain adjacent to zinc finger domain protein 2B (BAZ2B)
      pfam13868
      Location:8321047
      TPH; Trichohyalin-plectin-homology domain
      pfam15612
      Location:11781218
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15613
      Location:13581390
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
      cl00110
      Location:755824
      MBD; MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to ...

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      64792984..65034547 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063284041.1XP_063140111.1  bromodomain adjacent to zinc finger domain protein 2B isoform X26

      UniProtKB/TrEMBL
      A0A0G2K535
    2. XM_063284024.1XP_063140094.1  bromodomain adjacent to zinc finger domain protein 2B isoform X15

      UniProtKB/TrEMBL
      A0A0G2K535
      Related
      ENSRNOP00000098364.2, ENSRNOT00000120739.2
    3. XM_063284046.1XP_063140116.1  bromodomain adjacent to zinc finger domain protein 2B isoform X31

      UniProtKB/TrEMBL
      A0A0G2K535
    4. XM_063284011.1XP_063140081.1  bromodomain adjacent to zinc finger domain protein 2B isoform X6

      UniProtKB/TrEMBL
      A0A0G2K535
    5. XM_063284045.1XP_063140115.1  bromodomain adjacent to zinc finger domain protein 2B isoform X30

      UniProtKB/TrEMBL
      A0A0G2K535
    6. XM_063284009.1XP_063140079.1  bromodomain adjacent to zinc finger domain protein 2B isoform X5

      UniProtKB/TrEMBL
      A0A0G2K535
    7. XM_063284040.1XP_063140110.1  bromodomain adjacent to zinc finger domain protein 2B isoform X25

      UniProtKB/TrEMBL
      A0A0G2K535
      Related
      ENSRNOP00000098366.2, ENSRNOT00000120741.2
    8. XM_063284038.1XP_063140108.1  bromodomain adjacent to zinc finger domain protein 2B isoform X24

      UniProtKB/TrEMBL
      A0A0G2K535
    9. XM_063284022.1XP_063140092.1  bromodomain adjacent to zinc finger domain protein 2B isoform X14

      UniProtKB/TrEMBL
      A0A0G2K535
    10. XM_063284036.1XP_063140106.1  bromodomain adjacent to zinc finger domain protein 2B isoform X23

      UniProtKB/TrEMBL
      A0A0G2K535
      Related
      ENSRNOP00000098363.2, ENSRNOT00000120738.2
    11. XM_063284033.1XP_063140103.1  bromodomain adjacent to zinc finger domain protein 2B isoform X22

      UniProtKB/TrEMBL
      A0A0G2K535
    12. XM_063284018.1XP_063140088.1  bromodomain adjacent to zinc finger domain protein 2B isoform X13

      UniProtKB/TrEMBL
      A0A0G2K535
    13. XM_063284030.1XP_063140100.1  bromodomain adjacent to zinc finger domain protein 2B isoform X19

      UniProtKB/TrEMBL
      A0A0G2K535
    14. XM_063284047.1XP_063140117.1  bromodomain adjacent to zinc finger domain protein 2B isoform X32

      UniProtKB/TrEMBL
      A0A0G2K535
    15. XM_063284005.1XP_063140075.1  bromodomain adjacent to zinc finger domain protein 2B isoform X3

      UniProtKB/TrEMBL
      A0A0G2K535
    16. XM_063284031.1XP_063140101.1  bromodomain adjacent to zinc finger domain protein 2B isoform X20

      UniProtKB/TrEMBL
      A0A0G2K535
    17. XM_063284028.1XP_063140098.1  bromodomain adjacent to zinc finger domain protein 2B isoform X18

      UniProtKB/TrEMBL
      A0A0G2K535, A0A8I6A6K9
    18. XM_039105324.2XP_038961252.1  bromodomain adjacent to zinc finger domain protein 2B isoform X17

      UniProtKB/TrEMBL
      A0A0G2K535
      Conserved Domains (7) summary
      cd05503
      Location:19942090
      Bromo_BAZ2A_B_like; Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting ...
      PTZ00121
      Location:734957
      PTZ00121; MAEBL; Provisional
      smart00571
      Location:9801043
      DDT; domain in different transcription and chromosome remodeling factors
      cd15630
      Location:18611909
      PHD_BAZ2B; PHD finger found in bromodomain adjacent to zinc finger domain protein 2B (BAZ2B)
      pfam15612
      Location:10841124
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15613
      Location:12641296
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
      cl00110
      Location:659728
      MBD; MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to ...
    19. XM_063284014.1XP_063140084.1  bromodomain adjacent to zinc finger domain protein 2B isoform X9

      UniProtKB/TrEMBL
      A0A0G2K535
    20. XM_063284013.1XP_063140083.1  bromodomain adjacent to zinc finger domain protein 2B isoform X8

      UniProtKB/TrEMBL
      A0A0G2K535
    21. XM_063284012.1XP_063140082.1  bromodomain adjacent to zinc finger domain protein 2B isoform X7

      UniProtKB/TrEMBL
      A0A0G2K535
    22. XM_063284017.1XP_063140087.1  bromodomain adjacent to zinc finger domain protein 2B isoform X12

      UniProtKB/TrEMBL
      A0A0G2K535
    23. XM_063284008.1XP_063140078.1  bromodomain adjacent to zinc finger domain protein 2B isoform X4

      UniProtKB/TrEMBL
      A0A0G2K535
    24. XM_063284016.1XP_063140086.1  bromodomain adjacent to zinc finger domain protein 2B isoform X11

      UniProtKB/TrEMBL
      A0A0G2K535
    25. XM_063284004.1XP_063140074.1  bromodomain adjacent to zinc finger domain protein 2B isoform X2

      UniProtKB/TrEMBL
      A0A0G2K175, A0A0G2K535, A6JF71
    26. XM_063284032.1XP_063140102.1  bromodomain adjacent to zinc finger domain protein 2B isoform X21

      UniProtKB/TrEMBL
      A0A0G2K535
    27. XM_063284015.1XP_063140085.1  bromodomain adjacent to zinc finger domain protein 2B isoform X10

      UniProtKB/TrEMBL
      A0A0G2K535
    28. XM_063283999.1XP_063140069.1  bromodomain adjacent to zinc finger domain protein 2B isoform X1

      UniProtKB/TrEMBL
      A0A0G2K535
    29. XM_063284025.1XP_063140095.1  bromodomain adjacent to zinc finger domain protein 2B isoform X16

      UniProtKB/TrEMBL
      A0A0G2K535
    30. XM_063284010.1XP_063140080.1  bromodomain adjacent to zinc finger domain protein 2B isoform X5

      UniProtKB/TrEMBL
      A0A0G2K535
    31. XM_063284039.1XP_063140109.1  bromodomain adjacent to zinc finger domain protein 2B isoform X24

      UniProtKB/TrEMBL
      A0A0G2K535
      Related
      ENSRNOP00000087832.3, ENSRNOT00000110670.3
    32. XM_063284023.1XP_063140093.1  bromodomain adjacent to zinc finger domain protein 2B isoform X14

      UniProtKB/TrEMBL
      A0A0G2K535
    33. XM_063284037.1XP_063140107.1  bromodomain adjacent to zinc finger domain protein 2B isoform X23

      UniProtKB/TrEMBL
      A0A0G2K535
      Related
      ENSRNOP00000098362.2, ENSRNOT00000120737.2
    34. XM_063284034.1XP_063140104.1  bromodomain adjacent to zinc finger domain protein 2B isoform X22

      UniProtKB/TrEMBL
      A0A0G2K535
    35. XM_063284019.1XP_063140089.1  bromodomain adjacent to zinc finger domain protein 2B isoform X13

      UniProtKB/TrEMBL
      A0A0G2K535
    36. XM_063284029.1XP_063140099.1  bromodomain adjacent to zinc finger domain protein 2B isoform X19

      UniProtKB/TrEMBL
      A0A0G2K535
    37. XM_063284006.1XP_063140076.1  bromodomain adjacent to zinc finger domain protein 2B isoform X3

      UniProtKB/TrEMBL
      A0A0G2K535
    38. XM_063284026.1XP_063140096.1  bromodomain adjacent to zinc finger domain protein 2B isoform X17

      UniProtKB/TrEMBL
      A0A0G2K535
    39. XM_063284000.1XP_063140070.1  bromodomain adjacent to zinc finger domain protein 2B isoform X1

      UniProtKB/TrEMBL
      A0A0G2K535
    40. XM_063284021.1XP_063140091.1  bromodomain adjacent to zinc finger domain protein 2B isoform X13

      UniProtKB/TrEMBL
      A0A0G2K535
    41. XM_063284002.1XP_063140072.1  bromodomain adjacent to zinc finger domain protein 2B isoform X1

      UniProtKB/TrEMBL
      A0A0G2K535
    42. XM_063284020.1XP_063140090.1  bromodomain adjacent to zinc finger domain protein 2B isoform X13

      UniProtKB/TrEMBL
      A0A0G2K535
    43. XM_063284001.1XP_063140071.1  bromodomain adjacent to zinc finger domain protein 2B isoform X1

      UniProtKB/TrEMBL
      A0A0G2K535
    44. XM_063284035.1XP_063140105.1  bromodomain adjacent to zinc finger domain protein 2B isoform X22

      UniProtKB/TrEMBL
      A0A0G2K535
    45. XM_063284007.1XP_063140077.1  bromodomain adjacent to zinc finger domain protein 2B isoform X3

      UniProtKB/TrEMBL
      A0A0G2K535
    46. XM_063284027.1XP_063140097.1  bromodomain adjacent to zinc finger domain protein 2B isoform X17

      UniProtKB/TrEMBL
      A0A0G2K535
    47. XM_063284003.1XP_063140073.1  bromodomain adjacent to zinc finger domain protein 2B isoform X1

      UniProtKB/TrEMBL
      A0A0G2K535
    48. XM_063284044.1XP_063140114.1  bromodomain adjacent to zinc finger domain protein 2B isoform X29

    49. XM_063284043.1XP_063140113.1  bromodomain adjacent to zinc finger domain protein 2B isoform X28

    50. XM_063284042.1XP_063140112.1  bromodomain adjacent to zinc finger domain protein 2B isoform X27

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