Coa7 cytochrome c oxidase assembly factor 7 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Coa7provided by RGD
Official Full Name: cytochrome c oxidase assembly factor 7provided by RGD
Primary source: RGD:1305274
See related: EnsemblRapid:ENSRNOG00000010636 AllianceGenome:RGD:1305274
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Selrc1; RGD1305274
Summary: Predicted to be located in mitochondrion and nucleoplasm. Predicted to be active in mitochondrial intermembrane space. Human ortholog(s) of this gene implicated in spinocerebellar ataxia with axonal neuropathy type 3. Orthologous to human COA7 (cytochrome c oxidase assembly factor 7). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Muscle (RPKM 54.9), Heart (RPKM 54.3) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 5q34

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	5	NC_086023.1 (128298084..128308935)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	5	NC_051340.1 (123069356..123080942)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	5	NC_005104.4 (127925726..127936516)

Chromosome 5 - NC_086023.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in respiratory chain complex IV assembly	IEA Inferred from Electronic Annotation more info
involved_in respiratory chain complex IV assembly	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
is_active_in mitochondrial intermembrane space	IBA Inferred from Biological aspect of Ancestor more info
is_active_in mitochondrial intermembrane space	ISO Inferred from Sequence Orthology more info
located_in mitochondrial intermembrane space	ISO Inferred from Sequence Orthology more info
located_in mitochondrion	ISO Inferred from Sequence Orthology more info
located_in nucleoplasm	IEA Inferred from Electronic Annotation more info
located_in nucleoplasm	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: sel1 repeat-containing protein 1

Names: Sel1 repeat containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001106674.1 → NP_001100144.1 sel1 repeat-containing protein 1

See identical proteins and their annotated locations for NP_001100144.1

Status: PROVISIONAL

Source sequence(s)

CH474008

UniProtKB/TrEMBL

A6JYU7, D4AC65

Related

ENSRNOP00000014401.4, ENSRNOT00000014401.9

Conserved Domains (2) summary

COG0790
Location:30 → 218

TPR; TPR repeat [Signal transduction mechanisms]

sd00010
Location:50 → 80

SLR; SLR repeat [structural motif]