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    T03F1.12 Protein SYS1 homolog [ Caenorhabditis elegans ]

    Gene ID: 171969, updated on 9-Dec-2024

    Summary

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    Official Symbol
    T03F1.12
    Official Full Name
    Protein SYS1 homolog
    Primary source
    WormBase:WBGene00020193
    Locus tag
    CELE_T03F1.12
    See related
    AllianceGenome:WB:WBGene00020193
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in Golgi to endosome transport; Golgi to plasma membrane protein transport; and protein localization to Golgi apparatus. Predicted to be located in Golgi apparatus; cytosol; and membrane. Predicted to be active in Golgi membrane and trans-Golgi network. Orthologous to human SYS1 (SYS1 golgi trafficking protein). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See T03F1.12 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    3
    Sequence:
    Chromosome: I; NC_003279.8 (3875969..3876716, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene C-type lectin domain-containing protein Neighboring gene Ubiquitin-like modifier-activating enzyme 5 Neighboring gene Pre-mRNA-splicing factor SYF1 Neighboring gene CCHC-type domain-containing protein Neighboring gene Antibacterial factor-related peptide 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in Golgi to endosome transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in Golgi to plasma membrane protein transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in protein localization to Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in Golgi membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in trans-Golgi network IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Protein SYS1 homolog
    NP_001021606.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      3875969..3876716 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001026435.5 → NP_001021606.1  Protein SYS1 homolog [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001021606.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8I7G0
      Conserved Domains (1) summary
      pfam09801
      Location:4 → 139
      SYS1; Integral membrane protein S linking to the trans Golgi network
    Nucleotide Protein
    Heading Accession and Version

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