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    guanylate-binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839398, updated on 18-Sep-2024

    Summary

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    Official Full Name
    guanylate-binding family protein
    Primary source
    TAIR:AT1G03830
    Locus tag
    AT1G03830
    See related
    Araport:AT1G03830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F21M11.26; F21M11_26
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    13
    Sequence:
    Chromosome: 1; NC_003070.9 (961684..966790, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Nucleic acid-binding, OB-fold-like protein Neighboring gene E6-like protein Neighboring gene C2H2 and C2HC zinc fingers superfamily protein Neighboring gene Glutaredoxin family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A phase-separated nuclear GBPL circuit controls immunity in plants. Huang S, et al. Nature, 2021 Jun. PMID 34040255, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001197974.2
    NM_100262.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables GTPase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables chromatin binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    guanylate-binding family protein
    NP_001184903.1
    • guanylate-binding family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: immune response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Guanylate-binding protein, N-terminal (InterPro:IPR015894), Guanylate-binding protein, C-terminal (InterPro:IPR003191); BEST Arabidopsis thaliana protein match is: Guanylate-binding family protein (TAIR:AT5G46070.1).
    NP_171879.1
    • guanylate-binding family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: immune response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Guanylate-binding protein, N-terminal (InterPro:IPR015894), Guanylate-binding protein, C-terminal (InterPro:IPR003191); BEST Arabidopsis thaliana protein match is: Guanylate-binding family protein (TAIR:AT5G46070.1); Has 104208 Blast hits to 58378 proteins in 3029 species: Archae - 1549; Bacteria - 18958; Metazoa - 46662; Fungi - 8741; Plants - 6295; Viruses - 432; Other Eukaryotes - 21571 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      961684..966790 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001197974.2 → NP_001184903.1  guanylate-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001184903.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WGP9, A0A5S9SH92, F4I2I5
      Conserved Domains (3) summary
      cd01851
      Location:34 → 270
      GBP; Guanylate-binding protein (GBP) family (N-terminal domain)
      COG1196
      Location:527 → 867
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam02841
      Location:228 → 463
      GBP_C; Guanylate-binding protein, C-terminal domain

    2. NM_100262.3 → NP_171879.1  guanylate-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171879.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9SH92, Q9ZWA5
      Conserved Domains (2) summary
      pfam02841
      Location:206 → 441
      GBP_C; Guanylate-binding protein, C-terminal domain
      cd01851
      Location:34 → 248
      GBP; Guanylate-binding protein (GBP) family (N-terminal domain)
    Nucleotide Protein
    Heading Accession and Version

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