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    S-locus lectin protein kinase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842436, updated on 18-Sep-2024

    Summary

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    Official Full Name
    S-locus lectin protein kinase family protein
    Primary source
    TAIR:AT1G61420
    Locus tag
    AT1G61420
    See related
    Araport:AT1G61420
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1F9.9; T1F9_9
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (22660460..22664502, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene S-locus lectin protein kinase family protein Neighboring gene DNA double-strand break repair and VJ recombination XRCC4 Neighboring gene CAP-gly domain linker Neighboring gene ncRNA Neighboring gene S-locus lectin protein kinase family protein Neighboring gene S-locus lectin protein kinase family protein Neighboring gene CAP-gly domain linker Neighboring gene G-type lectin S-receptor-like Serine/Threonine-kinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001333957.1
    NM_001333958.1
    NM_001333959.1
    NM_001333960.1
    NM_104823.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables calmodulin binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein serine/threonine kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in recognition of pollen IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    S-locus lectin protein kinase family protein
    NP_176337.1
    • S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-2 domain (InterPro:IPR013227), S-locus receptor kinase, C-terminal (InterPro:IPR021820), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G61480.1); Has 124891 Blast hits to 122927 proteins in 4589 species: Archae - 114; Bacteria - 13852; Metazoa - 46086; Fungi - 10635; Plants - 35417; Viruses - 454; Other Eukaryotes - 18333 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22660460..22664502 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104823.4 → NP_176337.1  S-locus lectin protein kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176337.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64778
      UniProtKB/TrEMBL
      A0A178WFP0, A0A5S9WNL3
      Conserved Domains (7) summary
      smart00108
      Location:35 → 146
      B_lectin; Bulb-type mannose-specific lectin
      smart00221
      Location:495 → 765
      STYKc; Protein kinase; unclassified specificity
      cd00028
      Location:31 → 146
      B_lectin; Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically ...
      pfam11883
      Location:766 → 807
      DUF3403; Domain of unknown function (DUF3403)
      cd14066
      Location:500 → 766
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      pfam00954
      Location:205 → 311
      S_locus_glycop; S-locus glycoprotein domain
      pfam08276
      Location:339 → 399
      PAN_2; PAN-like domain

    2. NM_001333958.1 → NP_001321797.1  S-locus lectin protein kinase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AS39, A0A5S9WNL3

    3. NM_001333957.1 → NP_001321794.1  S-locus lectin protein kinase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WFP0, A0A1P8AS04, A0A5S9WNL3, A0A654EVS2
      Conserved Domains (5) summary
      cd14066
      Location:502 → 768
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      pfam00954
      Location:205 → 311
      S_locus_glycop; S-locus glycoprotein domain
      pfam01453
      Location:72 → 173
      B_lectin; D-mannose binding lectin
      pfam08276
      Location:343 → 399
      PAN_2; PAN-like domain
      pfam11883
      Location:768 → 809
      DUF3403; Domain of unknown function (DUF3403)

    4. NM_001333960.1 → NP_001321795.1  S-locus lectin protein kinase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ARZ8, A0A5S9WNL3

    5. NM_001333959.1 → NP_001321796.1  S-locus lectin protein kinase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WFP0, A0A1P8AS04, A0A5S9WNL3, A0A654EVS2
      Conserved Domains (5) summary
      cd14066
      Location:502 → 768
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      pfam00954
      Location:205 → 311
      S_locus_glycop; S-locus glycoprotein domain
      pfam01453
      Location:72 → 173
      B_lectin; D-mannose binding lectin
      pfam08276
      Location:343 → 399
      PAN_2; PAN-like domain
      pfam11883
      Location:768 → 809
      DUF3403; Domain of unknown function (DUF3403)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O64778.2

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