U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Zinc finger C-x8-C-x5-C-x3-H type family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839351, updated on 18-Sep-2024

    Summary

    Official Full Name
    Zinc finger C-x8-C-x5-C-x3-H type family protein
    Primary source
    TAIR:AT1G04990
    Locus tag
    AT1G04990
    See related
    Araport:AT1G04990
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13M7.1; F13M7_1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (1418612..1421863, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene lipid-binding serum glycoprotein family protein Neighboring gene PDI-like 2-2 Neighboring gene triacylglycerol lipase-like protein Neighboring gene Phosphotyrosine protein phosphatases superfamily protein Neighboring gene PPR containing protein Neighboring gene ncRNA

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001331509.1
    NM_001331510.1
    NM_001331511.1
    NM_001331512.1
    NM_100378.5
    NM_202030.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    Zinc finger C-x8-C-x5-C-x3-H type family protein
    NP_001318923.1
    • Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger nuclease 2 (TAIR:AT2G32930.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_563725.1
    • Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger nuclease 2 (TAIR:AT2G32930.1); Has 1789 Blast hits to 1100 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 576; Fungi - 244; Plants - 789; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1418612..1421863 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331509.1NP_001318923.1  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94AD9, Q9MAU8
      UniProtKB/TrEMBL
      A0A178WJY4, A0A384LLZ4, A0A654E6U3, C0SUT1
      Conserved Domains (2) summary
      COG5084
      Location:261403
      YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
      pfam00642
      Location:137162
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    2. NM_100378.5NP_563725.1  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563725.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94AD9, Q9MAU8
      UniProtKB/TrEMBL
      A0A178WJY4, A0A384LLZ4, A0A654E6U3, C0SUT1
      Conserved Domains (2) summary
      COG5084
      Location:261403
      YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
      pfam00642
      Location:137162
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    3. NM_001331510.1NP_001323178.1  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWC1
    4. NM_001331512.1NP_001323180.1  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWC3, A0A654E6U3
    5. NM_001331511.1NP_001323179.1  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWC2
    6. NM_202030.2NP_973759.1  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973759.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94AD9, Q9MAU8
      UniProtKB/TrEMBL
      A0A178WJY4, A0A384LLZ4, A0A654E6U3, C0SUT1
      Conserved Domains (2) summary
      COG5084
      Location:261403
      YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
      pfam00642
      Location:137162
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)