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    HYP1 hypothetical protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821205, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HYP1
    Official Full Name
    hypothetical protein 1
    Primary source
    TAIR:AT3G01100
    Locus tag
    AT3G01100
    See related
    Araport:AT3G01100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1; AT3G01110; ATHYP1; hypothetical protein 1; T4P13.21; T4P13_21
    Summary
    unknown protein, has cDNAs and ESTs associated to it
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    Genomic context

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    See HYP1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (34658..38660, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene WRKY DNA-binding protein 58 Neighboring gene Protein kinase superfamily protein Neighboring gene SNF1 kinase homolog 10 Neighboring gene Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Neighboring gene ATP synthase E chain

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. OSCA/TMEM63 are an Evolutionarily Conserved Family of Mechanically Activated Ion Channels. Murthy SE, et al. Elife, 2018 Nov 1. PMID 30382938, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001035536.3
    NM_001337314.1
    NM_001337315.1
    NM_110975.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium-activated cation channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mechanosensitive monoatomic ion channel activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hypothetical protein 1
    NP_001030613.1
    • hypothetical protein 1 (HYP1); LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: Early-responsive to dehydration stress protein (ERD4) (TAIR:AT1G69450.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_186759.2
    • hypothetical protein 1 (HYP1); LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: Early-responsive to dehydration stress protein (ERD4) (TAIR:AT1G69450.2); Has 1409 Blast hits to 1276 proteins in 193 species: Archae - 0; Bacteria - 2; Metazoa - 184; Fungi - 674; Plants - 429; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      34658..38660 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_110975.5 → NP_186759.2  hypothetical protein 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q39075, Q39126, Q56YE2, Q8GUH7
      UniProtKB/TrEMBL
      A0A097NUP6, A0A178VAY8
      Conserved Domains (4) summary
      COG5594
      Location:2 → 694
      COG5594; Uncharacterized integral membrane protein [Function unknown]
      pfam02714
      Location:304 → 621
      RSN1_7TM; Calcium-dependent channel, 7TM region, putative phosphate
      pfam13967
      Location:5 → 167
      RSN1_TM; Late exocytosis, associated with Golgi transport
      pfam14703
      Location:225 → 286
      PHM7_cyt; Cytosolic domain of 10TM putative phosphate transporter

    2. NM_001035536.3 → NP_001030613.1  hypothetical protein 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VAY8, F4J116
      Conserved Domains (3) summary
      pfam02714
      Location:304 → 583
      RSN1_7TM; Calcium-dependent channel, 7TM region, putative phosphate
      pfam13967
      Location:5 → 167
      RSN1_TM; Late exocytosis, associated with Golgi transport
      pfam14703
      Location:225 → 286
      PHM7_cyt; Cytosolic domain of 10TM putative phosphate transporter

    3. NM_001337314.1 → NP_001327194.1  hypothetical protein 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VAY8, A0A1I9LRJ9

    4. NM_001337315.1 → NP_001327195.1  hypothetical protein 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LRK0, A0A5S9X813
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GUH7.1

    Gene LinkOut

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