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    PnsL4 FK506-binding protein 16-2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830126, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PnsL4
    Official Full Name
    FK506-binding protein 16-2
    Primary source
    TAIR:AT4G39710
    Locus tag
    AT4G39710
    See related
    Araport:AT4G39710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    FK506-binding protein 16-2; FKBP16-2; Photosynthetic NDH subcomplex L 4; T19P19.100; T19P19_100
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    Genomic context

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    See PnsL4 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (18426492..18428578, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene SAP domain-containing protein Neighboring gene MICOS complex subunit Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene VQ motif-containing protein Neighboring gene Lipase/lipooxygenase, PLAT/LH2 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A chloroplast FKBP interacts with and affects the accumulation of Rieske subunit of cytochrome bf complex. Gupta R, et al. Proc Natl Acad Sci U S A, 2002 Nov 26. PMID 12424338, Free PMC Article
    2. Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction. Peltier JB, et al. Plant Cell, 2002 Jan. PMID 11826309, Free PMC Article
    3. In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. Friso G, et al. Plant Cell, 2004 Feb. PMID 14729914, Free PMC Article
    4. New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. Peltier JB, et al. J Biol Chem, 2004 Nov 19. PMID 15322131
    5. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_120132.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid lumen HDA PubMed 
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 
    located_in thylakoid HDA PubMed 

    General protein information

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    Preferred Names
    FK506-binding protein 16-2
    NP_001320168.1
    • FK506-binding protein 16-2 (FKBP16-2); FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast thylakoid membrane, chloroplast thylakoid lumen; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FK506-binding protein 13 (TAIR:AT5G45680.1).
    NP_568067.1
    • FK506-binding protein 16-2 (FKBP16-2); FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FK506-binding protein 13 (TAIR:AT5G45680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18426492..18428578 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342548.1 → NP_001320168.1  FK506-binding protein 16-2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JW56

    2. NM_001342549.1 → NP_001329278.1  FK506-binding protein 16-2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65658, Q941D9, Q9SCY3
      UniProtKB/TrEMBL
      A0A178UXR8, A0A5S9Y048
      Conserved Domains (1) summary
      pfam00254
      Location:106 → 205
      FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase

    3. NM_120132.4 → NP_568067.1  FK506-binding protein 16-2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568067.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65658, Q941D9, Q9SCY3
      UniProtKB/TrEMBL
      A0A178UXR8, A0A5S9Y048
      Conserved Domains (1) summary
      pfam00254
      Location:106 → 205
      FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SCY3.1

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