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    iqd2 IQ-domain 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831696, updated on 18-Sep-2024

    Summary

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    Official Symbol
    iqd2
    Official Full Name
    IQ-domain 2
    Primary source
    TAIR:AT5G03040
    Locus tag
    AT5G03040
    See related
    Araport:AT5G03040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15A17.70; F15A17_70; IQ-domain 2
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    Genomic context

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    See iqd2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (709948..713133, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene ncRNA Neighboring gene Chaperone DnaJ-domain superfamily protein Neighboring gene ncRNA Neighboring gene knotted 1-binding protein Neighboring gene striatin-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The IQD Family of Calmodulin-Binding Proteins Links Calcium Signaling to Microtubules, Membrane Subdomains, and the Nucleus. Bürstenbinder K, et al. Plant Physiol, 2017 Mar. PMID 28115582, Free PMC Article
    2. Identification of proteins that interact with catalytically active calcium-dependent protein kinases from Arabidopsis. Uno Y, et al. Mol Genet Genomics, 2009 Apr. PMID 19130088
    3. Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development. Yamaoka S, et al. Plant Cell, 2013 Aug. PMID 23975897, Free PMC Article
    4. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
    5. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001161221.1
    NM_001203282.1
    NM_120382.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    colocalizes_with microtubule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    IQ-domain 2
    NP_001154693.1
    • IQ-domain 2 (iqd2); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 1 (TAIR:AT3G09710.1); Has 1155 Blast hits to 1120 proteins in 81 species: Archae - 0; Bacteria - 2; Metazoa - 71; Fungi - 33; Plants - 987; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
    NP_001190211.1
    • IQ-domain 2 (iqd2); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 1 (TAIR:AT3G09710.1).
    NP_568110.2
    • IQ-domain 2 (iqd2); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 1 (TAIR:AT3G09710.1); Has 1155 Blast hits to 1120 proteins in 81 species: Archae - 0; Bacteria - 2; Metazoa - 71; Fungi - 33; Plants - 987; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      709948..713133 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120382.4 → NP_568110.2  IQ-domain 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568110.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93ZH7, Q9LYY1
      UniProtKB/TrEMBL
      A0A178UAZ3, A0A654FXT6
      Conserved Domains (3) summary
      smart00015
      Location:114 → 135
      IQ; Calmodulin-binding motif
      pfam03999
      Location:271 → 394
      MAP65_ASE1; Microtubule associated protein (MAP65/ASE1 family)
      cd21759
      Location:116 → 203
      CBD_MYO6-like; calmodulin binding domain found in unconventional myosin-VI and similar proteins

    2. NM_001161221.1 → NP_001154693.1  IQ-domain 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154693.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93ZH7, Q9LYY1
      UniProtKB/TrEMBL
      A0A178UAZ3, A0A654FXT6
      Conserved Domains (3) summary
      smart00015
      Location:114 → 135
      IQ; Calmodulin-binding motif
      pfam03999
      Location:271 → 394
      MAP65_ASE1; Microtubule associated protein (MAP65/ASE1 family)
      cd21759
      Location:116 → 203
      CBD_MYO6-like; calmodulin binding domain found in unconventional myosin-VI and similar proteins

    3. NM_001203282.1 → NP_001190211.1  IQ-domain 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190211.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93ZH7, Q9LYY1
      UniProtKB/TrEMBL
      A0A178UAZ3, A0A654FXT6
      Conserved Domains (3) summary
      smart00015
      Location:114 → 135
      IQ; Calmodulin-binding motif
      pfam03999
      Location:271 → 394
      MAP65_ASE1; Microtubule associated protein (MAP65/ASE1 family)
      cd21759
      Location:116 → 203
      CBD_MYO6-like; calmodulin binding domain found in unconventional myosin-VI and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93ZH7.1

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