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    EMB2771 E3 ubiquitin ligase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830439, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EMB2771
    Official Full Name
    E3 ubiquitin ligase
    Primary source
    TAIR:AT5G05560
    Locus tag
    AT5G05560
    See related
    Araport:AT5G05560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    anaphase promoting complex 1; APC1; EMBRYO DEFECTIVE 2771; MOP10.10; MOP10_10
    Summary
    Encodes a subunit of the Arabidopsis thaliana E3 ubiquitin ligase complex that plays a synergistic role with APC4 both in female gametogenesis and in embryogenesis.
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    Genomic context

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    See EMB2771 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    38
    Sequence:
    Chromosome: 5; NC_003076.8 (1640098..1654830)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene small RNA degrading nuclease 2 Neighboring gene sequence-specific DNA binding transcription factor Neighboring gene transducin family protein / WD-40 repeat family protein Neighboring gene fatty acid desaturase 8 Neighboring gene phosphoribosylanthranilate isomerase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis anaphase-promoting complex/cyclosome subunit 1 is critical for both female gametogenesis and embryogenesis(F). Wang Y, et al. J Integr Plant Biol, 2013 Jan. PMID 23206231
    2. Protein degradation in signaling. Callis J, et al. Curr Opin Plant Biol, 2000 Oct. PMID 11019805
    3. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001342824.1
    NM_001342826.1

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within embryo sac development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within plant ovule development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within ubiquitin-dependent protein catabolic process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of anaphase-promoting complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of ubiquitin ligase complex TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin ligase
    NP_001318485.1
    • EMBRYO DEFECTIVE 2771 (EMB2771); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1640098..1654830
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342825.1 → NP_001331419.1  E3 ubiquitin ligase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQE8, A0A1P8BDT3, A0A654FYJ0
      Conserved Domains (3) summary
      pfam01851
      Location:1289 → 1322
      PC_rep; Proteasome/cyclosome repeat
      pfam12859
      Location:104 → 206
      ANAPC1; Anaphase-promoting complex subunit 1
      pfam18122
      Location:1595 → 1758
      APC1_C; Anaphase-promoting complex sub unit 1 C-terminal domain

    2. NM_001342824.1 → NP_001318485.1  E3 ubiquitin ligase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FFF9
      UniProtKB/TrEMBL
      A0A2H1ZE59

    3. NM_001342826.1 → NP_001331420.1  E3 ubiquitin ligase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQE8, A0A1P8BDT7
    Nucleotide Protein
    Heading Accession and Version

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