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    transmembrane protein, putative (DUF247) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831000, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein, putative (DUF247)
    Primary source
    TAIR:AT5G11290
    Locus tag
    AT5G11290
    See related
    Araport:AT5G11290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2I11.180; F2I11_180
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (3598926..3600549)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Basic-leucine zipper (bZIP) transcription factor family protein Neighboring gene overexpressor of cationic peroxidase 3 Neighboring gene tail fiber Neighboring gene miscRNA Neighboring gene mitotic-like cyclin 3B from Arabidopsi

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein, putative (DUF247)
    NP_196690.2
    • Plant protein of unknown function (DUF247); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31980.1); Has 951 Blast hits to 908 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 951; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3598926..3600549
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343176.1 → NP_001331812.1  transmembrane protein, putative (DUF247) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U8T8, A0A384KS90, Q9LFM8
      Conserved Domains (1) summary
      pfam03140
      Location:35 → 410
      DUF247; Plant protein of unknown function

    2. NM_121167.3 → NP_196690.2  transmembrane protein, putative (DUF247) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196690.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q5EAF1
      Conserved Domains (1) summary
      pfam03140
      Location:1 → 341
      DUF247; Plant protein of unknown function
    Nucleotide Protein
    Heading Accession and Version

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