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    Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834016, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein
    Primary source
    TAIR:AT5G40180
    Locus tag
    AT5G40180
    See related
    Araport:AT5G40180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MSN9.8; MSN9_8
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (16067868..16068751)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Defensin-like (DEFL) family protein Neighboring gene Ankyrin repeat family protein Neighboring gene receptor like protein 54 Neighboring gene RNA ligase/cyclic nucleotide phosphodiesterase family protein Neighboring gene DegP protease 9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein
    NP_198834.1
    • BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 22 (TAIR:AT3G28150.1); Has 117 Blast hits to 117 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      16067868..16068751
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123382.2 → NP_198834.1  Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198834.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y9L3, A0A654G6Q2, F4KHA3
      Conserved Domains (1) summary
      cl01053
      Location:3 → 61
      SGNH_hydrolase; or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical ...
    Nucleotide Protein
    Heading Accession and Version

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