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    UBP21 ubiquitin-specific protease 21 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834717, updated on 18-Sep-2024

    Summary

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    Official Symbol
    UBP21
    Official Full Name
    ubiquitin-specific protease 21
    Primary source
    TAIR:AT5G46740
    Locus tag
    AT5G46740
    See related
    Araport:AT5G46740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MZA15.16; MZA15_16; ubiquitin-specific protease 21
    Summary
    Encodes a ubiquitin-specific protease.
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    Genomic context

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    See UBP21 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (18965271..18968798, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene AIG2-like (avirulence induced gene) family protein Neighboring gene glycine-rich protein Neighboring gene ARF-GAP domain 9 Neighboring gene Basic helix-loop-helix (bHLH) DNA-binding family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide identification of RETINOBLASTOMA RELATED 1 binding sites in Arabidopsis reveals novel DNA damage regulators. Bouyer D, et al. PLoS Genet, 2018 Nov. PMID 30500810, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001344697.1
    NM_124044.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA repair IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ubiquitin-specific protease 21
    NP_568667.1
    • ubiquitin-specific protease 21 (UBP21); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 20 (TAIR:AT4G17895.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      18965271..18968798 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124044.2 → NP_568667.1  ubiquitin-specific protease 21 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568667.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FIQ1, Q9FPS6
      UniProtKB/TrEMBL
      A0A654G8P4
      Conserved Domains (2) summary
      cd02661
      Location:162 → 467
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam00443
      Location:163 → 466
      UCH; Ubiquitin carboxyl-terminal hydrolase

    2. NM_001344697.1 → NP_001330462.1  ubiquitin-specific protease 21 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BAX6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FIQ1.1

    Gene LinkOut

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