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    Gpatch11 G patch domain containing 11 [ Mus musculus (house mouse) ]

    Gene ID: 53951, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Gpatch11provided by MGI
    Official Full Name
    G patch domain containing 11provided by MGI
    Primary source
    MGI:MGI:1858435
    See related
    Ensembl:ENSMUSG00000050668 AllianceGenome:MGI:1858435
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ccdc75; 2310002B06Rik
    Summary
    Predicted to enable nucleic acid binding activity. Predicted to be active in kinetochore. Orthologous to human GPATCH11 (G-patch domain containing 11). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in cerebellum adult (RPKM 5.3), CNS E18 (RPKM 5.1) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Gpatch11 in Genome Data Viewer
    Location:
    17 E3; 17 49.54 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (79142951..79155737)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (78835516..78848308)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2C pseudogene Neighboring gene HEAT repeat containing 5B Neighboring gene STARR-positive B cell enhancer ABC_E773 Neighboring gene eukaryotic translation initiation factor 2-alpha kinase 2 Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene Neighboring gene predicted gene, 26637 Neighboring gene sulfotransferase family, cytosolic, 6B, member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Analysis of cDNA sequences from mouse testis. Kerr SM, et al. Mamm Genome, 1994 Sep. PMID 8000140
    2. Comparative sequence analysis of 634 kb of the mouse chromosome 16 region of conserved synteny with the human velocardiofacial syndrome region on chromosome 22q11.2. Lund J, et al. Genomics, 2000 Feb 1. PMID 10704284
    3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    4. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
    5. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC106516

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in kinetochore IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in kinetochore ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in kinetochore ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    G patch domain-containing protein 11
    Names
    coiled-coil domain containing 75
    coiled-coil domain-containing protein 75

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403213.1 → NP_001390142.1  G patch domain-containing protein 11

      Status: VALIDATED

      Source sequence(s)
      AC151264, AC154274
      UniProtKB/TrEMBL
      A0A0R4J215

    2. NM_181649.7 → NP_857632.4  G patch domain-containing protein 11

      See identical proteins and their annotated locations for NP_857632.4

      Status: VALIDATED

      Source sequence(s)
      AC151264, AC154274
      Consensus CDS
      CCDS28979.1
      UniProtKB/Swiss-Prot
      B9EHQ5, Q05BG4, Q3UFS4, Q569F3
      UniProtKB/TrEMBL
      A0A0R4J215
      Related
      ENSMUSP00000126814.2, ENSMUST00000170759.3
      Conserved Domains (2) summary
      smart00443
      Location:74 → 117
      G_patch; glycine rich nucleic binding domain
      pfam13821
      Location:216 → 263
      DUF4187; Domain of unknown function (DUF4187)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      79142951..79155737
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030249901.2 → XP_030105761.1  G patch domain-containing protein 11 isoform X2

      UniProtKB/Swiss-Prot
      B9EHQ5, Q05BG4, Q3UFS4, Q569F3
      Conserved Domains (2) summary
      smart00443
      Location:46 → 89
      G_patch; glycine rich nucleic binding domain
      pfam13821
      Location:188 → 235
      DUF4187; Domain of unknown function (DUF4187)

    2. XM_017317577.3 → XP_017173066.1  G patch domain-containing protein 11 isoform X2

      UniProtKB/Swiss-Prot
      B9EHQ5, Q05BG4, Q3UFS4, Q569F3
      Conserved Domains (2) summary
      smart00443
      Location:46 → 89
      G_patch; glycine rich nucleic binding domain
      pfam13821
      Location:188 → 235
      DUF4187; Domain of unknown function (DUF4187)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3UFS4.2 GenPept UniProtKB/Swiss-Prot:Q3UFS4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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