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    Tmem167a transmembrane protein 167A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100359823, updated on 27-Nov-2024

    Summary

    Official Symbol
    Tmem167aprovided by RGD
    Official Full Name
    transmembrane protein 167Aprovided by RGD
    Primary source
    RGD:2323318
    See related
    EnsemblRapid:ENSRNOG00000085236 AllianceGenome:RGD:2323318
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be involved in constitutive secretory pathway; intracellular transport; and protein secretion. Predicted to be located in Golgi apparatus. Orthologous to human TMEM167A (transmembrane protein 167A). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Brain (RPKM 135.5), Thymus (RPKM 123.9) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Tmem167a in Genome Data Viewer
    Location:
    2q12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (22933027..22951974)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (21197799..21216746)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (18927544..18946110)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134485711 Neighboring gene X-ray repair cross complementing 4 Neighboring gene 40S ribosomal protein S6 pseudogene Neighboring gene small nucleolar RNA U109 Neighboring gene uncharacterized LOC134485712 Neighboring gene ATPase H+ transporting accessory protein 1 like Neighboring gene ribosomal protein S23

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in constitutive secretory pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in intracellular transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in protein secretion IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    protein kish-A
    Names
    rCG44733-like
    NP_001386611.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001399682.1NP_001386611.1  protein kish-A

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002
      UniProtKB/TrEMBL
      A6I4N8
      Related
      ENSRNOP00000111292.1, ENSRNOT00000141291.1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      22933027..22951974
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)