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    LOC100128885 uncharacterized LOC100128885 [ Homo sapiens (human) ]

    Gene ID: 100128885, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC100128885
    Gene description
    uncharacterized LOC100128885
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC100128885 in Genome Data Viewer
    Location:
    7q11.21
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (64574695..64618589)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (65782205..65826065)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (64035073..64078967)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene PAGE family member 4 pseudogene Neighboring gene IgLON family member 5 pseudogene Neighboring gene uncharacterized LOC124901657 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:64035152-64035652 Neighboring gene glycine cleavage system protein H (aminomethyl carrier) pseudogene Neighboring gene BNIP3 pseudogene 44 Neighboring gene uncharacterized LOC124901656 Neighboring gene uncharacterized LOC105375326 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26060 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26061 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26062 Neighboring gene zinc finger protein 107 Neighboring gene BCL2 interacting protein 3 pseudogene 11 Neighboring gene microRNA 6839

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. The DNA sequence of human chromosome 7. Hillier LW, et al. Nature, 2003 Jul 10. PMID 12853948

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Clone Names

    • FLJ43440

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_077227.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016769, AK125429

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      64574695..64618589
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      65782205..65826065
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_009320.1: Suppressed sequence

      Description
      NG_009320.1: This RefSeq was permanently suppressed because it is now thought that this gene is not a pseudogene but a transcribed gene with no protein product..
    Nucleotide Protein
    Heading Accession and Version

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