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    LOC100506858 uncharacterized LOC100506858 [ Homo sapiens (human) ]

    Gene ID: 100506858, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC100506858
    Gene description
    uncharacterized LOC100506858
    See related
    Ensembl:ENSG00000304180
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC100506858 in Genome Data Viewer
    Location:
    5p15.33
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (2303720..2312201, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (2219474..2227943, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (2303834..2312315, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene keratin-associated protein 5-5-like Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1930660-1931240 Neighboring gene uncharacterized LOC105374618 Neighboring gene meiotic recombination hotspot 5A Neighboring gene NANOG hESC enhancer GRCh37_chr5:1944459-1944980 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1945776-1946394 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1948847-1949348 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:1950332-1951531 Neighboring gene Sharpr-MPRA regulatory region 501 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1961828-1962566 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1964219-1964719 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1973793-1974292 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15890 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2067819-2068402 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2068403-2068984 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2075638-2076138 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2077789-2078290 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83860 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83872 Neighboring gene VISTA enhancer hs633 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:2136525-2137724 Neighboring gene NANOG hESC enhancer GRCh37_chr5:2144015-2144548 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:2145193-2145694 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:2145695-2146194 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:2146889-2147388 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83887 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:2157739-2158239 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83908 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2175812-2176312 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83940 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2191782-2192282 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2192283-2192783 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83970 Neighboring gene VISTA enhancer hs1327 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2212387-2213238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2260271-2261061 Neighboring gene uncharacterized LOC124901166 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:2269269-2269796 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:2269797-2270323 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83975 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2299803-2300482 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2353718-2354218 Neighboring gene NANOG hESC enhancer GRCh37_chr5:2359276-2359777 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:2393157-2394356 Neighboring gene uncharacterized LOC124901167 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_84195 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_84199 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2591788-2592348 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2592349-2592909 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2635417-2636236 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:2640855-2641373 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:2655710-2656909 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:2658151-2659350 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:2663143-2663330 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:2696278-2696794 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:2697069-2698268 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2709931-2710432 Neighboring gene long stress-induced non-coding transcript 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104616.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA442505, AW291183
      Related
      ENST00000800857.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      2303720..2312201 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      2219474..2227943 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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