U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC285804 uncharacterized LOC285804 [ Homo sapiens (human) ]

    Gene ID: 285804, updated on 10-Dec-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC285804
    Gene description
    uncharacterized LOC285804
    See related
    Ensembl:ENSG00000271820
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in pancreas (RPKM 1.8), spleen (RPKM 0.3) and 2 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC285804 in Genome Data Viewer
    Location:
    6q27
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (170266669..170276762, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (171625704..171635453, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (170575757..170585850, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170521815-170522322 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170522323-170522829 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170523369-170523870 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170523871-170524370 Neighboring gene ribosomal protein L12 pseudogene 23 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170532303-170533284 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170535247-170536227 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:170541906-170542750 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170543843-170544393 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170544394-170544943 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170553487-170554252 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170554253-170555018 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170560847-170561347 Neighboring gene uncharacterized LOC154449 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:170575708-170576284 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:170576285-170576861 Neighboring gene long intergenic non-protein coding RNA 1624 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:170591232-170592431 Neighboring gene OCT4-H3K4me1 hESC enhancer GRCh37_chr6:170604755-170605382 Neighboring gene family with sequence similarity 120 member B Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_91390 Neighboring gene delta like canonical Notch ligand 1 Neighboring gene microRNA 4644

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

    Go to the top of the page Help

    Markers

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_126021.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078605, AL109910
      Related
      ENST00000607733.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      170266669..170276762 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187553.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      2569..4000 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      171625704..171635453 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials