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    LOC102723838 uncharacterized LOC102723838 [ Homo sapiens (human) ]

    Gene ID: 102723838, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC102723838
    Gene description
    uncharacterized LOC102723838
    See related
    Ensembl:ENSG00000255482
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC102723838 in Genome Data Viewer
    Location:
    11q22.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (102467255..102498801)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (102469386..102500939)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (102337986..102369532)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene transmembrane protein 123 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5442 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:102299689-102299866 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5443 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5444 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5445 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5446 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3861 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5447 Neighboring gene TMEM123 divergent transcript Neighboring gene uncharacterized LOC124902740 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3862 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_18559 Neighboring gene matrix metallopeptidase 7 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3863 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3864 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5448 Neighboring gene matrix metallopeptidase 20 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:102486041-102486542 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:102486543-102487042

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135076.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX093783
      Related
      ENST00000529278.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      102467255..102498801
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      102469386..102500939
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials