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    GLCCI1-DT GLCCI1 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 100505921, updated on 10-Dec-2024

    Summary

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    Official Symbol
    GLCCI1-DTprovided by HGNC
    Official Full Name
    GLCCI1 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:40852
    See related
    AllianceGenome:HGNC:40852
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 7.4) and thyroid (RPKM 0.4) See more
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    Genomic context

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    See GLCCI1-DT in Genome Data Viewer
    Location:
    7p21.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (7949839..7968752, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (8068359..8087268, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (7989470..8008383, complement)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901586 Neighboring gene RNA, U6 small nuclear 534, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25650 Neighboring gene cyclin B2 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25651 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17965 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25652 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17966 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17967 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17968 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17969 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25653 Neighboring gene peptidylprolyl isomerase like 4 pseudogene Neighboring gene glucocorticoid induced 1 Neighboring gene MPRA-validated peak6363 silencer Neighboring gene uncharacterized LOC105375142

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. The DNA sequence of human chromosome 7. Hillier LW, et al. Nature, 2003 Jul 10. PMID 12853948

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Clone Names

    • AC006042.7, AC009473.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110018.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006042, AI223166, BQ441241

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      7949839..7968752 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      8068359..8087268 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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