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    LINC02899 long intergenic non-protein coding RNA 2899 [ Homo sapiens (human) ]

    Gene ID: 439936, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC02899provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2899provided by HGNC
    Primary source
    HGNC:HGNC:26630
    See related
    Ensembl:ENSG00000248874 AllianceGenome:HGNC:26630
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C5orf17
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC02899 in Genome Data Viewer
    Location:
    5p14.2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (23951348..24178265)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (24058729..24285712)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (23951457..24178374)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986377 Neighboring gene uncharacterized LOC124901172 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:23951667-23952166 Neighboring gene uncharacterized LOC124900210 Neighboring gene ADH5 pseudogene 5 Neighboring gene uncharacterized LOC124901173 Neighboring gene AKT interacting protein pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:24208573-24209476 Neighboring gene AKTIP pseudogene 2 Neighboring gene uncharacterized LOC105374689 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:24382088-24382767 Neighboring gene Sharpr-MPRA regulatory region 3372 Neighboring gene cadherin 10 Neighboring gene Neanderthal introgressed variant-containing enhancers experimental_84111 and experimental_84123 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:24644784-24645379 Neighboring gene uncharacterized LOC124901174

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. A protein array screen for Kaposi's sarcoma-associated herpesvirus LANA interactors links LANA to TIP60, PP2A activity, and telomere shortening. Shamay M, et al. J Virol, 2012 May. PMID 22379092, Free PMC Article
    2. VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Yue Y, et al. Cell Discov, 2018. PMID 29507755, Free PMC Article
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Clone Names

    • FLJ34836

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_131245.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK092155, BM988139
      Related
      ENST00000512559.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      23951348..24178265
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      24058729..24285712
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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