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    NUCB1-AS1 NUCB1 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100874085, updated on 10-Dec-2024

    Summary

    Official Symbol
    NUCB1-AS1provided by HGNC
    Official Full Name
    NUCB1 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:40419
    See related
    Ensembl:ENSG00000235191 AllianceGenome:HGNC:40419
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in kidney (RPKM 35.3), fat (RPKM 31.2) and 25 other tissues See more
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    Genomic context

    See NUCB1-AS1 in Genome Data Viewer
    Location:
    19q13.33
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (48910930..48918891, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (51905789..51913752, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (49414187..49422148, complement)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:49375236-49375847 Neighboring gene CRISPRi-FlowFISH-validated BAX, FTL and NUCB1 regulatory elements Neighboring gene CRISPRi-FlowFISH-validated FTL and NUCB1 regulatory element 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14913 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14914 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14915 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14916 Neighboring gene protein phosphatase 1 regulatory subunit 15A Neighboring gene CRISPRi-FlowFISH-validated FTL and NUCB1 regulatory element 2 Neighboring gene CRISPRi-validated cis-regulatory element chr19.5328 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr19:49382795-49383507 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:49390815-49391709 Neighboring gene TUB like protein 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:49398133-49398948 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10906 Neighboring gene CRISPRi-FlowFISH-validated BAX and NUCB1 regulatory element Neighboring gene nucleobindin 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:49422347-49422846 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:49425993-49426492 Neighboring gene Sharpr-MPRA regulatory region 4424 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:49436529-49437030 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:49438311-49438870 Neighboring gene dihydrodiol dehydrogenase Neighboring gene Sharpr-MPRA regulatory region 12688 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:49457811-49458379 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:49458380-49458947 Neighboring gene BCL2 associated X, apoptosis regulator

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    General gene information

    Other Names

    • NUCB1 antisense RNA 1 (non-protein coding)

    Clone Names

    • AC026803.14

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046633.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC026803
      Related
      ENST00000416432.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      48910930..48918891 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      51905789..51913752 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)