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    Zfp810 zinc finger protein 810 [ Mus musculus (house mouse) ]

    Gene ID: 235050, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Zfp810provided by MGI
    Official Full Name
    zinc finger protein 810provided by MGI
    Primary source
    MGI:MGI:2384563
    See related
    Ensembl:ENSMUSG00000066829 AllianceGenome:MGI:2384563
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in central nervous system; early conceptus; and genitourinary system. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in CNS E14 (RPKM 8.3), whole brain E14.5 (RPKM 7.5) and 28 other tissues See more
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    Genomic context

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    See Zfp810 in Genome Data Viewer
    Location:
    9 A3; 9 8.79 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (22188044..22218973, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (22276737..22307814, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E1382 Neighboring gene predicted gene, 39307 Neighboring gene predicted gene, 39308 Neighboring gene zinc finger protein 810 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E887 Neighboring gene STARR-seq mESC enhancer starr_23542 Neighboring gene STARR-seq mESC enhancer starr_23543 Neighboring gene high mobility group nucleosomal binding domain 2 pseudogene Neighboring gene 40S ribosomal protein S20 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst. Guo G, et al. Dev Cell, 2010 Apr 20. PMID 20412781
    2. A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Yokoyama S, et al. Dev Cell, 2009 Dec. PMID 20059953, Free PMC Article
    3. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, et al. Science, 2004 Dec 24. PMID 15618518
    4. GUDMAP: the genitourinary developmental molecular anatomy project. McMahon AP, et al. J Am Soc Nephrol, 2008 Apr. PMID 18287559
    5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC6652

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 157

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409748.1 → NP_001396677.1  zinc finger protein 157 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC159308

    2. NM_001409749.1 → NP_001396678.1  zinc finger protein 157 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC159308

    3. NM_145612.3 → NP_663587.1  zinc finger protein 157 isoform 1

      See identical proteins and their annotated locations for NP_663587.1

      Status: VALIDATED

      Source sequence(s)
      AC159308
      Consensus CDS
      CCDS40562.1
      UniProtKB/TrEMBL
      Q99K45
      Related
      ENSMUSP00000083459.7, ENSMUST00000086278.7
      Conserved Domains (4) summary
      smart00349
      Location:4 → 59
      KRAB; krueppel associated box
      COG5048
      Location:194 → 368
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:324 → 344
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:364 → 387
      zf-H2C2_2; Zinc-finger double domain

    RNA

    1. NR_176893.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC159308

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      22188044..22218973 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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