U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Gm5617 predicted gene 5617 [ Mus musculus (house mouse) ]

    Gene ID: 434402, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Gm5617provided by MGI
    Official Full Name
    predicted gene 5617provided by MGI
    Primary source
    MGI:MGI:3643566
    See related
    Ensembl:ENSMUSG00000042293 AllianceGenome:MGI:3643566
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG434402
    Summary
    Orthologous to human C11orf71 (chromosome 11 open reading frame 71). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Gm5617 in Genome Data Viewer
    Location:
    9 A5.3; 9 26.43 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (48406643..48407275)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (48495343..48495975)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_24068 Neighboring gene STARR-positive B cell enhancer ABC_E3826 Neighboring gene RNA exonuclease 2 Neighboring gene STARR-positive B cell enhancer ABC_E9759 Neighboring gene RNA binding motif protein 7 Neighboring gene STARR-seq mESC enhancer starr_24069 Neighboring gene nicotinamide N-methyltransferase Neighboring gene STARR-positive B cell enhancer ABC_E5067 Neighboring gene STARR-seq mESC enhancer starr_24071 Neighboring gene STARR-seq mESC enhancer starr_24072 Neighboring gene predicted gene, 53521

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Miyata H, et al. Proc Natl Acad Sci U S A, 2016 Jul 12. PMID 27357688, Free PMC Article
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC5739

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein C11orf71 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001004191.3 → NP_001004191.2  uncharacterized protein C11orf71 homolog

      See identical proteins and their annotated locations for NP_001004191.2

      Status: VALIDATED

      Source sequence(s)
      AC160992, AK007723
      Consensus CDS
      CCDS52787.1
      UniProtKB/Swiss-Prot
      E9QNP8, Q91VN2
      Related
      ENSMUSP00000040380.8, ENSMUST00000048824.9
      Conserved Domains (1) summary
      pfam15747
      Location:1 → 106
      DUF4687; Domain of unknown function (DUF4687)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      48406643..48407275
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q91VN2.2 GenPept UniProtKB/Swiss-Prot:Q91VN2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools