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    Speer5-ps1 spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1 [ Mus musculus (house mouse) ]

    Gene ID: 70365, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Speer5-ps1provided by MGI
    Official Full Name
    spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1provided by MGI
    Primary source
    MGI:MGI:1917615
    See related
    Ensembl:ENSMUSG00000091358 Ensembl:ENSMUSG00000121674 AllianceGenome:MGI:1917615
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    SPEER-5; Speer5-ps; 1700007C10Rik
    Summary
    Acts upstream of or within response to wounding. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 2.3) See more
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    Genomic context

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    See Speer5-ps1 in Genome Data Viewer
    Location:
    10 B2; 10 23.24 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (44046443..44095581)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (44170447..44219585)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene preferentially expressed antigen in melanoma like 7 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E2323 Neighboring gene coiled-coil domain containing 137 pseudogene Neighboring gene STARR-seq mESC enhancer starr_26535 Neighboring gene STARR-seq mESC enhancer starr_26536 Neighboring gene STARR-positive B cell enhancer ABC_E9786 Neighboring gene predicted gene, 40637 Neighboring gene autophagy related 5 Neighboring gene STARR-positive B cell enhancer ABC_E10605 Neighboring gene STARR-seq mESC enhancer starr_26539 Neighboring gene predicted gene, 19229

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. SPEER--a new family of testis-specific genes from the mouse. Spiess AN, et al. Biol Reprod, 2003 Jun. PMID 12606357
    2. Identification of candidate long non-coding RNAs in response to myocardial infarction. Zangrando J, et al. BMC Genomics, 2014 Jun 10. PMID 24917243, Free PMC Article
    3. Cracking the egg: molecular dynamics and evolutionary aspects of the transition from the fully grown oocyte to embryo. Evsikov AV, et al. Genes Dev, 2006 Oct 1. PMID 17015433, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Other Names

    • sperm-associated glutamate (E)-rich protein 5, pseudogene
    • spermatogenic-associated glutamate (E)-rich protein 5, pseudogene

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    acts_upstream_of_or_within response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_001582.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) is the longer transcript.
      Source sequence(s)
      AC153863, AK005695, BB679670
      Related
      ENSMUST00000169525.3

    2. NR_027506.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) is the shorter transcript. It lacks the 5' four exons but has an alternate 5' exon, compared to variant 1.
      Source sequence(s)
      BB679670, DV646842
      Related
      ENSMUST00000215938.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      44046443..44095581
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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